Publications

Total publications : 264 (7th, Jul, 2020)

1.

Shimizu K, Takahashi A, Motooka D, Nakamura S, Tomono K, Ogura H, Shimazu T. Fecal Gram Staining of Phagocytosed Bacteria to Differentiate Methicillin-Resistant Staphylococcus Aureus: A Case Report. J. Infect. Chemother. 2020.

2.

Fukushima K, Miki M, Matsumoto Y, Uda E, Yamamoto Y, Kogita Y, Kagawa Y, Matsuki T, Kagawa H, Oshitani Y, Motooka D, Tsujino K, Yoshimura K, Miki K, Hayashi A, Nakamura S, Kitada S, Takeuchi Y, Kida H. The Impact of Adjuvant Surgical Treatment of Nontuberculous Mycobacterial Pulmonary Disease on Prognosis and Outcome. Respir. Res. 2020, 21 (1), 153.

3.

Abe Y, Fukushima K, Hosono Y, Matsumoto Y, Motooka D, Ose N, Nakamura S, Kitada S, Kida H, Kumanogoh A. Host Immune Response and Novel Diagnostic Approach to NTM Infections. Int J Mol Sci 2020, 21 (12).

4.

Yoshinami T, Kagara N, Motooka D, Nakamura S, Miyake T, Tanei T, Naoi Y, Shimoda M, Shimazu K, Kim S J, Noguchi S. Detection of CtDNA with Personalized Molecular Barcode NGS and Its Clinical Significance in Patients with Early Breast Cancer. Transl Oncol 2020, 13 (8), 100787.

5.

Sato A, Ono C, Tamura T, Mori H, Izumi T, Torii S, Fauzyah Y, Yamamoto T, Morioka Y, Okuzaki D, Fukuhara T, Matsuura Y. Rimonabant Suppresses RNA Transcription of Hepatitis B Virus by Inhibiting Hepatocyte Nuclear Factor 4α. Microbiol. Immunol. 2020, 64 (5), 345–355.

6.

Nagasawa M, Tomimatsu K, Terada K, Kondo K, Miyazaki K, Miyazaki M, Motooka D, Okuzaki D, Yoshida T, Kageyama S, Kawamoto H, Kawauchi A, Agata Y. Long Non-Coding RNA MANCR Is a Target of BET Bromodomain Protein BRD4 and Plays a Critical Role in Cellular Migration and Invasion Abilities of Prostate Cancer. Biochem. Biophys. Res. Commun. 2020, 526 (1), 128–134.

7.

Makino S, Takahashi H, Okuzaki D, Miyoshi N, Haraguchi N, Hata T, Matsuda C, Yamamoto H, Mizushima T, Mori M, Doki Y. DCLK1 Integrates Induction of TRIB3, EMT, Drug Resistance and Poor Prognosis in Colorectal Cancer. Carcinogenesis 2020, 41 (3), 394–396.

8.

Kusakabe S, Fukushima K, Yokota T, Hino A, Fujita J, Motooka D, Nakamura S, Shibayama H, Kanakura Y. Enterococcus: A Predictor of Ravaged Microbiota and Poor Prognosis after Allogeneic Hematopoietic Stem Cell Transplantation. Biol. Blood Marrow Transplant. 2020, 26 (5), 1028–1033.

9.

Koike Y, Kuwatsuka S, Nishimoto K, Motooka D, Murota H. Skin Mycobiome of Psoriasis Patients Is Retained during Treatment with TNF and IL-17 Inhibitors. Int J Mol Sci 2020, 21 (11).

10.

Kawasaki K, Nojima S, Hijiki S, Tahara S, Ohshima K, Matsui T, Hori Y, Kurashige M, Umeda D, Kiyokawa H, Kido K, Okuzaki D, Morii E. FAM111B Enhances Proliferation of KRAS-Driven Lung Adenocarcinoma by Degrading P16. Cancer Sci. 2020.

11.

Iwatani S, Shinzaki S, Amano T, Otake Y, Tani M, Yoshihara T, Tsujii Y, Hayashi Y, Inoue T, Okuzaki D, Mizushima T, Miyoshi E, Iijima H, Takehara T. Oligosaccharide-Dependent Anti-Inflammatory Role of Galectin-1 for Macrophages in Ulcerative Colitis. J. Gastroenterol. Hepatol. 2020.

12.

Amano K, Okuzaki D, Aikawa T, Kogo M. Indian Hedgehog in Craniofacial Neural Crest Cells Links to Skeletal Malocclusion by Regulating Associated Cartilage Formation and Gene Expression. FASEB J. 2020, 34 (5), 6791–6807.

13.

Yoshimura Y, Okuzaki D. Error-Free and Error-Prone DNA Repair Gene Expression Data through Reprogramming and Passage in Human IPS Cells. Data Brief 2020, 29, 105228.

14.

Ohkura N, Yasumizu Y, Kitagawa Y, Tanaka A, Nakamura Y, Motooka D, Nakamura S, Okada Y, Sakaguchi S. Regulatory T Cell-Specific Epigenomic Region Variants Are a Key Determinant of Susceptibility to Common Autoimmune Diseases. Immunity 2020.

15.

Yamaguchi T, Kawahara R, Hamamoto K, Hirai I, Khong D T, Nguyen T N, Tran H T, Motooka D, Nakamura S, Yamamoto Y. High Prevalence of Colistin-Resistant Escherichia Coli with Chromosomally Carried Mcr-1 in Healthy Residents in Vietnam. mSphere 2020, 5 (2).

16.

Tsuda T, Nishide M, Maeda Y, Hayama Y, Koyama S, Nojima S, Takamatsu H, Okuzaki D, Morita T, Nakatani T, Kato Y, Nakanishi Y, Futami Y, Suga Y, Naito Y, Konaka H, Satoh S, Naito M, Izumi M, Obata S, Nakatani A, Shikina T, Takeda K, Hayama M, Inohara H, Kumanogoh A. Pathological and Therapeutic Implications of Eosinophil-Derived Semaphorin 4D in Eosinophilic Chronic Rhinosinusitis. J. Allergy Clin. Immunol. 2020, 145 (3), 843-854.e4.

17.

Teruya S, Hiramatsu Y, Nakamura K, Fukui-Miyazaki A, Tsukamoto K, Shinoda N, Motooka D, Nakamura S, Ishigaki K, Shinzawa N, Nishida T, Sugihara F, Maeda Y, Horiguchi Y. Bordetella Dermonecrotic Toxin Is a Neurotropic Virulence Factor That Uses CaV3.1 as the Cell Surface Receptor. mBio 2020, 11 (2).

18.

Nagate Y, Ezoe S, Fujita J, Okuzakis D, Motooka D, Ishibashi T, Ichii M, Tanimura A, Kurashige M, Morii E, Fukushima T, Suehiro Y, Yokota T, Shibayama H, Oritani K, Kanakura Y. Ectonucleotidase CD39 Is Highly Expressed on ATLL Cells and Is Responsible for Their Immunosuppressive Function. Leukemia 2020.

19.

Morimoto Y, Mizushima T, Wu X, Okuzaki D, Yokoyama Y, Inoue A, Hata T, Hirose H, Qian Y, Wang J, Miyoshi N, Takahashi H, Haraguchi N, Matsuda C, Doki Y, Mori M, Yamamoto H. MiR-4711-5p Regulates Cancer Stemness and Cell Cycle Progression via KLF5, MDM2 and TFDP1 in Colon Cancer Cells. Br. J. Cancer 2020, 122 (7), 1037–1049.

20.

Mohsin M, Tanaka K, Kawahara R, Kondo S, Noguchi H, Motooka D, Nakamura S, Khong D T, Nguyen T N, Hoang T N, Yamamoto Y. Whole-Genome Sequencing and Comparative Analysis of the Genomes of Bacteroides Thetaiotaomicron and Escherichia Coli Isolated from a Healthy Resident in Vietnam. J Glob Antimicrob Resist 2020, 21, 65–67.

21.

Masunaga N, Kagara N, Motooka D, Nakamura S, Miyake T, Tanei T, Naoi Y, Shimoda M, Shimazu K, Kim S J, Noguchi S. Molecular Barcode Sequencing of the Whole Ligand Binding Domain of the ESR1 Gene in Cell-Free DNA from Patients with Metastatic Breast Cancer. Transl Oncol 2020, 13 (3), 100735.

22.

Ikeda A, Ogino T, Kayama H, Okuzaki D, Nishimura J, Fujino S, Miyoshi N, Takahashi H, Uemura M, Matsuda C, Yamamoto H, Takeda K, Mizushima T, Mori M, Doki Y. Human NKp44+ Group 3 Innate Lymphoid Cells Associate with Tumor-Associated Tertiary Lymphoid Structures in Colorectal Cancer. Cancer Immunol Res 2020.

23.

Hiramatsu Y, Suzuki K, Motooka D, Nakamura S, Horiguchi Y. Expression of Small RNAs of Bordetella Pertussis Colonizing Murine Tracheas. Microbiol. Immunol. 2020.

24.

Hashimoto K, Kaito T, Furuya M, Seno S, Okuzaki D, Kikuta J, Tsukazaki H, Matsuda H, Yoshikawa H, Ishii M. In Vivo Dynamic Analysis of BMP-2-Induced Ectopic Bone Formation. Sci Rep 2020, 10 (1), 4751.

25.

Fukushima K, Satoh T, Sugihara F, Sato Y, Okamoto T, Mitsui Y, Yoshio S, Li S, Nojima S, Motooka D, Nakamura S, Kida H, Standley D M, Morii E, Kanto T, Yanagita M, Matsuura Y, Nagasawa T, Kumanogoh A, Akira S. Dysregulated Expression of the Nuclear Exosome Targeting Complex Component Rbm7 in Nonhematopoietic Cells Licenses the Development of Fibrosis. Immunity 2020, 52 (3), 542-556.e13.

26.

Cai Y, Iwasaki M, Motooka D, Liu D X, Yu S, Cooper K, Hart R, Adams R, Burdette T, Postnikova E N, Kurtz J, St Claire M, Ye C, Kuhn J H, Martínez-Sobrido L, de la Torre J C. A Lassa Virus Live-Attenuated Vaccine Candidate Based on Rearrangement of the Intergenic Region. mBio 2020, 11 (2).

27.

Tachibana S-I, Matsuzaki S, Tanaka M, Shiota M, Motooka D, Nakamura S, Goto S G. The Autophagy-Related Protein GABARAP Is Induced during Overwintering in the Bean Bug (Hemiptera: Alydidae). J. Econ. Entomol. 2020, 113 (1), 427–434.

28.

Okuzaki D, Yamauchi T, Mitani F, Miyata M, Ninomiya Y, Watanabe R, Akamatsu H, Oneyama C. C-Src Promotes Tumor Progression through Downregulation of MicroRNA-129-1-3p. Cancer Sci. 2020, 111 (2), 418–428.

29.

Yamanishi K, Hashimoto T, Miyauchi M, Mukai K, Ikubo K, Uwa N, Watanabe Y, Ikawa T, Okuzaki D, Okamura H, Yamanishi H, Matsunaga H. Analysis of Genes Linked to Depressive-like Behaviors in Interleukin-18-Deficient Mice: Gene Expression Profiles in the Brain. Biomed Rep 2020, 12 (1), 3–10.

30.

Yamamoto S P, Motooka D, Egawa K, Kaida A, Hirai Y, Kubo H, Motomura K, Nakamura S, Iritani N. Novel Human Reovirus Isolated from Children and Its Long-Term Circulation with Reassortments. Sci Rep 2020, 10 (1), 963.

31.

Kishikawa T, Maeda Y, Nii T, Motooka D, Matsumoto Y, Matsushita M, Matsuoka H, Yoshimura M, Kawada S, Teshigawara S, Oguro E, Okita Y, Kawamoto K, Higa S, Hirano T, Narazaki M, Ogata A, Saeki Y, Nakamura S, Inohara H, Kumanogoh A, Takeda K, Okada Y. Metagenome-Wide Association Study of Gut Microbiome Revealed Novel Aetiology of Rheumatoid Arthritis in the Japanese Population. Ann. Rheum. Dis. 2020, 79 (1), 103–111.

32.

Ichii M, Oritani K, Toda J, Saito H, Shi H, Shibayama H, Motooka D, Kitai Y, Muromoto R, Kashiwakura J-I, Saitoh K, Okuzaki D, Matsuda T, Kanakura Y. Signal-Transducing Adaptor Protein-2 Delays Recovery of B Lineage Lymphocytes during Hematopoietic Stress. Haematologica 2020.

33.

Al Kadi M, Jung N, Ito S, Kameoka S, Hishida T, Motooka D, Nakamura S, Iida T, Okuzaki D. UNAGI: An Automated Pipeline for Nanopore Full-Length CDNA Sequencing Uncovers Novel Transcripts and Isoforms in Yeast. Funct. Integr. Genomics 2020.

34.

Umeda K, Nakamura H, Fukuda A, Yamaguchi T, Matsumoto Y, Motooka D, Nakamura S, Kawahara R. Molecular Characterization of BlaKHM-1 Encoding Plasmid in an Enterobacter Hormaechei Subsp. Hoffmannii Isolate from Blood Culture. PLoS ONE 2020, 15 (1), e0227605.

35.

Izumi T, Sakata K, Okuzaki D, Inokuchi S, Tamura T, Motooka D, Nakamura S, Ono C, Shimokawa M, Matsuura Y, Mori M, Fukuhara T, Yoshizumi T. Characterization of Human Pegivirus Infection in Liver Transplantation Recipients. J. Med. Virol. 2019, 91 (12), 2093–2100.

36.

Qian Y, Wu X, Yokoyama Y, Okuzaki D, Taguchi M, Hirose H, Wang J, Hata T, Inoue A, Hiraki M, Ohtsuka M, Takahashi H, Haraguchi N, Mizushima T, Tanaka S, Mori M, Yamamoto H. E-Cadherin-Fc Chimera Protein Matrix Enhances Cancer Stem-like Properties and Induces Mesenchymal Features in Colon Cancer Cells. Cancer Sci. 2019, 110 (11), 3520–3532.

37.

Osada-Oka M, Goda N, Saiga H, Yamamoto M, Takeda K, Ozeki Y, Yamaguchi T, Soga T, Tateishi Y, Miura K, Okuzaki D, Kobayashi K, Matsumoto S. Metabolic Adaptation to Glycolysis Is a Basic Defense Mechanism of Macrophages for Mycobacterium Tuberculosis Infection. Int. Immunol. 2019, 31 (12), 781–793.

38.

Kamitani T, Murota H, Arase N, Wataya-Kaneda M, Sato-Nishiuchi R, Sekiguchi K, Okuzaki D, Motooka D, Katayama I. Expression of Polydom in Dermal Neurofibroma and Surrounding Dermis in von Recklinghausen’s Disease. J. Dermatol. Sci. 2019, 96 (2), 73–80.

39.

Hirose Y, Yamaguchi M, Okuzaki D, Motooka D, Hamamoto H, Hanada T, Sumitomo T, Nakata M, Kawabata S. Streptococcus Pyogenes Transcriptome Changes in the Inflammatory Environment of Necrotizing Fasciitis. Appl. Environ. Microbiol. 2019, 85 (21).

40.

Imai R, Sato T, Iwamoto Y, Hanada Y, Terao M, Ohta Y, Osaki Y, Imai T, Morihana T, Okazaki S, Oshima K, Okuzaki D, Katayama I, Inohara H. Osteoclasts Modulate Bone Erosion in Cholesteatoma via RANKL Signaling. J. Assoc. Res. Otolaryngol. 2019, 20 (5), 449–459.

41.

Okamoto M, Ali M, Komichi S, Watanabe M, Huang H, Ito Y, Miura J, Hirose Y, Mizuhira M, Takahashi Y, Okuzaki D, Kawabata S, Imazato S, Hayashi M. Surface Pre-Reacted Glass Filler Contributes to Tertiary Dentin Formation through a Mechanism Different Than That of Hydraulic Calcium-Silicate Cement. J Clin Med 2019, 8 (9).

42.

Kusakabe S, Fukushima K, Maeda T, Motooka D, Nakamura S, Fujita J, Yokota T, Shibayama H, Oritani K, Kanakura Y. Pre- and Post-Serial Metagenomic Analysis of Gut Microbiota as a Prognostic Factor in Patients Undergoing Haematopoietic Stem Cell Transplantation. Br. J. Haematol. 2019.

43.

Itoh K, Ebata T, Hirata H, Torii T, Sugimoto W, Onodera K, Nakajima W, Uehara I, Okuzaki D, Yamauchi S, Budirahardja Y, Nishikata T, Tanaka N, Kawauchi K. DMPK Is a New Candidate Mediator of Tumor Suppressor P53-Dependent Cell Death. Molecules 2019, 24 (17).

44.

Yasugi M, Motooka D, Nakamura S, Miyake M. Phosphorothioation of Foreign DNA Influences the Transformation Efficiency in Clostridium Perfringens NCTC8239. Anaerobe 2019, 102085.

45.

Ikawa T, Watanabe Y, Okuzaki D, Goto N, Okamura N, Yamanishi K, Higashino T, Yamanishi H, Okamura H, Higashino H. A New Approach to Identifying Hypertension-Associated Genes in the Mesenteric Artery of Spontaneously Hypertensive Rats and Stroke-Prone Spontaneously Hypertensive Rats. J. Hypertens. 2019, 37 (8), 1644–1656.

46.

Ichikawa-Seki M, Motooka D, Kinami A, Murakoshi F, Takahashi Y, Aita J, Hayashi K, Tashibu A, Nakamura S, Iida T, Horii T, Nishikawa Y. Specific Increase of Fusobacterium in the Faecal Microbiota of Neonatal Calves Infected with Cryptosporidium Parvum. Sci Rep 2019, 9 (1), 12517.

47.

Bando H, Pradipta A, Iwanaga S, Okamoto T, Okuzaki D, Tanaka S, Vega-Rodríguez J, Lee Y, Ma J S, Sakaguchi N, Soga A, Fukumoto S, Sasai M, Matsuura Y, Yuda M, Jacobs-Lorena M, Yamamoto M. CXCR4 Regulates Plasmodium Development in Mouse and Human Hepatocytes. J. Exp. Med. 2019, 216 (8), 1733–1748.

48.

Asao K, Hashida N, Ando S, Motooka D, Kurakami H, Nakamura S, Yamashita D, Maruyama K, Kawasaki S, Yamada T, Iida T, Nishida K. Conjunctival Dysbiosis in Mucosa-Associated Lymphoid Tissue Lymphoma. Sci Rep 2019, 9 (1), 8424.

49.

Tao C, Kinoshita N, Shoji K, Motooka D, Nakamura S, Eura R, Ueoka K, Kubota M, Ishiguro A, Miyairi I. Urinary Tract Infection Due to Anaerobic Bacteria in a Two-Month-Old Infant. J. Infect. Chemother. 2019, 25 (5), 368–370.

50.

Tahara S, Nojima S, Ohshima K, Hori Y, Kurashige M, Wada N, Motoyama Y, Okuzaki D, Ikeda J-I, Morii E. Serum Deprivation-Response Protein Regulates Aldehyde Dehydrogenase 1 through Integrin-Linked Kinase Signaling in Endometrioid Carcinoma Cells. Cancer Sci. 2019, 110 (5), 1804–1813.

51.

Takeda K, Sakakibara S, Yamashita K, Motooka D, Nakamura S, El Hussien M A, Katayama J, Maeda Y, Nakata M, Hamada S, Standley D M, Hayama M, Shikina T, Inohara H, Kikutani H. Allergic Conversion of Protective Mucosal Immunity against Nasal Bacteria in Patients with Chronic Rhinosinusitis with Nasal Polyposis. J. Allergy Clin. Immunol. 2019, 143 (3), 1163-1175.e15.

52.

Ueda T, Yokota T, Okuzaki D, Uno Y, Mashimo T, Kubota Y, Sudo T, Ishibashi T, Shingai Y, Doi Y, Ozawa T, Nakai R, Tanimura A, Ichii M, Ezoe S, Shibayama H, Oritani K, Kanakura Y. Endothelial Cell-Selective Adhesion Molecule Contributes to the Development of Definitive Hematopoiesis in the Fetal Liver. Stem Cell Reports 2019, 13 (6), 992–1005.

53.

Hasegawa T, Kikuta J, Sudo T, Matsuura Y, Matsui T, Simmons S, Ebina K, Hirao M, Okuzaki D, Yoshida Y, Hirao A, Kalinichenko V V, Yamaoka K, Takeuchi T, Ishii M. Identification of a Novel Arthritis-Associated Osteoclast Precursor Macrophage Regulated by FoxM1. Nat. Immunol. 2019, 20 (12), 1631–1643.

54.

Konno M, Koseki J, Asai A, Yamagata A, Shimamura T, Motooka D, Okuzaki D, Kawamoto K, Mizushima T, Eguchi H, Takiguchi S, Satoh T, Mimori K, Ochiya T, Doki Y, Ofusa K, Mori M, Ishii H. Distinct Methylation Levels of Mature MicroRNAs in Gastrointestinal Cancers. Nat Commun 2019, 10 (1), 3888.

55.

Kayama H, Tani H, Kitada S, Opasawatchai A, Okumura R, Motooka D, Nakamura S, Takeda K. BATF2 Prevents T-Cell-Mediated Intestinal Inflammation through Regulation of the IL-23/IL-17 Pathway. Int. Immunol. 2019, 31 (6), 371–383.

56.

Sugawara Y, Akeda Y, Hagiya H, Sakamoto N, Takeuchi D, Shanmugakani R K, Motooka D, Nishi I, Zin K N, Aye M M, Myint T, Tomono K, Hamada S. Spreading Patterns of NDM-Producing Enterobacteriaceae in Clinical and Environmental Settings in Yangon, Myanmar. Antimicrob. Agents Chemother. 2019, 63 (3).

57.

Tsuda T, Maeda Y, Nishide M, Koyama S, Hayama Y, Nojima S, Takamatsu H, Okuzaki D, Kinehara Y, Kato Y, Nakatani T, Obata S, Akazawa H, Shikina T, Takeda K, Hayama M, Inohara H, Kumanogoh A. Eosinophil-Derived Neurotoxin Enhances Airway Remodeling in Eosinophilic Chronic Rhinosinusitis and Correlates with Disease Severity. Int. Immunol. 2019, 31 (1), 33–40.

58.

Tanimoto Y, Tamai S, Matsuzaki T, Takeuchi N, Noju T, Yanagida S, Kage-Nakadai E, Yamaguchi Y, Kodama T, Nakamura S, Motooka D, Iida T, Nishikawa Y. Diffusely Adherent Escherichia Coli Strains Isolated from Healthy Carriers Suppress Cytokine Secretions of Epithelial Cells Stimulated by Inflammatory Substances. Infect. Immun. 2019, 87 (1).

59.

Pareek S, Kurakawa T, Das B, Motooka D, Nakaya S, Rongsen-Chandola T, Goyal N, Kayama H, Dodd D, Okumura R, Maeda Y, Fujimoto K, Nii T, Ogawa T, Iida T, Bhandari N, Kida T, Nakamura S, Nair G B, Takeda K. Comparison of Japanese and Indian Intestinal Microbiota Shows Diet-Dependent Interaction between Bacteria and Fungi. NPJ Biofilms Microbiomes 2019, 5, 37.

60.

Nawa N, Hirata K, Kawatani K, Nambara T, Omori S, Banno K, Kokubu C, Takeda J, Nishimura K, Ohtaka M, Nakanishi M, Okuzaki D, Taniguchi H, Arahori H, Wada K, Kitabatake Y, Ozono K. Elimination of Protein Aggregates Prevents Premature Senescence in Human Trisomy 21 Fibroblasts. PLoS ONE 2019, 14 (7), e0219592.

61.

Matsumoto Y, Kinjo T, Motooka D, Nabeya D, Jung N, Uechi K, Horii T, Iida T, Fujita J, Nakamura S. Comprehensive Subspecies Identification of 175 Nontuberculous Mycobacteria Species Based on 7547 Genomic Profiles. Emerg Microbes Infect 2019, 8 (1), 1043–1053.

62.

Le-Vo H-N, Tran P T-B, Le L, Matsumoto Y, Motooka D, Nakamura S, Jones J W, Iida T, Cao V. Complex Class 1 Integron in a Clinical Escherichia Coli Strain From Vietnam Carrying Both Mcr-1 and BlaNDM-1. Front Microbiol 2019, 10, 2472.

63.

Le-Ha T-D, Le L, Le-Vo H-N, Anda M, Motooka D, Nakamura S, Tran L K, Tran P T-B, Iida T, Cao V. Characterization of a Carbapenem- and Colistin-Resistant Enterobacter Cloacae Carrying Tn6901 in BlaNDM-1 Genomic Context. Infect Drug Resist 2019, 12, 733–739.

64.

Le L, Tran L K, Le-Ha T-D, Tran B-P, Le-Vo H-N, Nguyen Y-N, Nguyen H-L, Hoang-Ngoc K-Q, Matsumoto Y, Motooka D, Nakamura S, Jones J W, Iida T, Cao V. Coexistence Of Plasmid-Mediated Mcr-1 And BlaNDM-4 Genes In A Klebsiella Pneumoniae Clinical Strain In Vietnam. Infect Drug Resist 2019, 12, 3703–3707.

65.

Hsu Y-F, Ito M, Maruyama T, Matsuoka M, Jung N, Matsumoto Y, Motooka D, Nakamura S. Deep Learning Approach for Pathogen Detection Through Shotgun Metagenomics Sequence Classification. In Artificial Intelligence in Medicine, Riaño, D., Wilk, S., ten Teije, A., Eds., Lecture Notes in Computer Science, Springer International Publishing: Cham, 2019, pp 24–30.

66.

Fujita T, Motooka D, Fujii H. Target Enrichment from a DNA Mixture by Oligoribonucleotide Interference-PCR (ORNi-PCR). Biol Methods Protoc 2019, 4 (1), bpz009.

67.

Nakata J, Nakajima H, Hayashibara H, Imafuku K, Morimoto S, Fujiki F, Motooka D, Okuzaki D, Hasegawa K, Hosen N, Tsuboi A, Oka Y, Kumanogoh A, Oji Y, Sugiyama H. Extremely Strong Infiltration of WT1-Specific CTLs into Mouse Tumor by the Combination Vaccine with WT1-Specific CTL and Helper Peptides. Oncotarget 2018, 9 (89), 36029–36038.

68.

Hsu Y-F, Matsuoka M, Jung N, Matsumoto Y, Motooka D, Nakamura S. [Regular Paper] A High-Performance Sequence Analysis Engine for Shotgun Metagenomics through GPU Acceleration. In 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE), IEEE, 2018, pp 54–60.

69.

Fukata T, Mizushima T, Nishimura J, Okuzaki D, Wu X, Hirose H, Yokoyama Y, Kubota Y, Nagata K, Tsujimura N, Inoue A, Miyoshi N, Haraguchi N, Takahashi H, Hata T, Matsuda C, Kayama H, Takeda K, Doki Y, Mori M, Yamamoto H. The Supercarbonate Apatite-MicroRNA Complex Inhibits Dextran Sodium Sulfate-Induced Colitis. Mol Ther Nucleic Acids 2018, 12, 658–671.

70.

Kokuda R, Watanabe R, Okuzaki D, Akamatsu H, Oneyama C. MicroRNA-137-Mediated Src Oncogenic Signaling Promotes Cancer Progression. Genes Cells 2018.

71.

Yoshizawa H, Motooka D, Matsumoto Y, Katada R, Nakamura S, Morii E, Iida T, Matsumoto H. A Case of Severe Soft Tissue Infection Due to Streptococcus Tigurinus Diagnosed by Necropsy in Which Genomic Analysis Was Useful for Clarifying Its Pathogenicity. Pathol. Int. 2018, 68 (5), 301–306.

72.

Toratani M, Konno M, Asai A, Koseki J, Kawamoto K, Tamari K, Li Z, Sakai D, Kudo T, Satoh T, Sato K, Motooka D, Okuzaki D, Doki Y, Mori M, Ogawa K, Ishii H. A Convolutional Neural Network Uses Microscopic Images to Differentiate between Mouse and Human Cell Lines and Their Radioresistant Clones. Cancer Res. 2018, 78 (23), 6703–6707.

73.

Sakamoto N, Akeda Y, Sugawara Y, Takeuchi D, Motooka D, Yamamoto N, Laolerd W, Santanirand P, Hamada S. Genomic Characterization of Carbapenemase-Producing Klebsiella Pneumoniae with Chromosomally Carried BlaNDM-1. Antimicrob. Agents Chemother. 2018, 62 (12).

74.

Ikeda M, Shimizu K, Ogura H, Kurakawa T, Umemoto E, Motooka D, Nakamura S, Ichimaru N, Takeda K, Takahara S, Hirano S-I, Shimazu T. Hydrogen-Rich Saline Regulates Intestinal Barrier Dysfunction, Dysbiosis, and Bacterial Translocation in a Murine Model of Sepsis. Shock 2018, 50 (6), 640–647.

75.

Yamanishi K, Maeda S, Kuwahara-Otani S, Hashimoto T, Ikubo K, Mukai K, Nakasho K, Gamachi N, El-Darawish Y, Li W, Okuzaki D, Watanabe Y, Yamanishi H, Okamura H, Matsunaga H. Deficiency in Interleukin-18 Promotes Differentiation of Brown Adipose Tissue Resulting in Fat Accumulation despite Dyslipidemia. J Transl Med 2018, 16 (1), 314.

76.

Tsai C-Y, Sakakibara S, Yasui T, Minamitani T, Okuzaki D, Kikutani H. Bystander Inhibition of Humoral Immune Responses by Epstein-Barr Virus LMP1. Int. Immunol. 2018, 30 (12), 579–590.

77.

Uda K, Koyama-Wakai C, Shoji K, Iwase N, Motooka D, Nakamura S, Miyairi I. WU Polyomavirus Detected in Children with Severe Respiratory Failure. J. Clin. Virol. 2018, 107, 25–28.

78.

Osa A, Uenami T, Koyama S, Fujimoto K, Okuzaki D, Takimoto T, Hirata H, Yano Y, Yokota S, Kinehara Y, Naito Y, Otsuka T, Kanazu M, Kuroyama M, Hamaguchi M, Koba T, Futami Y, Ishijima M, Suga Y, Akazawa Y, Machiyama H, Iwahori K, Takamatsu H, Nagatomo I, Takeda Y, Kida H, Akbay E A, Hammerman P S, Wong K-K, Dranoff G, Mori M, Kijima T, Kumanogoh A. Clinical Implications of Monitoring Nivolumab Immunokinetics in Non-Small Cell Lung Cancer Patients. JCI Insight 2018, 3 (19).

79.

Nagahama Y, Shimoda M, Mao G, Singh S K, Kozakai Y, Sun X, Motooka D, Nakamura S, Tanaka H, Satoh T, Maeda K, Akira S. Regnase-1 Controls Colon Epithelial Regeneration via Regulation of MTOR and Purine Metabolism. Proc. Natl. Acad. Sci. U.S.A. 2018, 115 (43), 11036–11041.

80.

Bielinska K, Radkowski M, Grochowska M, Perlejewski K, Huc T, Jaworska K, Motooka D, Nakamura S, Ufnal M. High Salt Intake Increases Plasma Trimethylamine N-Oxide (TMAO) Concentration and Produces Gut Dysbiosis in Rats. Nutrition 2018, 54, 33–39.

81.

Matsuura Y, Kikuta J, Kishi Y, Hasegawa T, Okuzaki D, Hirano T, Minoshima M, Kikuchi K, Kumanogoh A, Ishii M. In Vivo Visualisation of Different Modes of Action of Biological DMARDs Inhibiting Osteoclastic Bone Resorption. Ann. Rheum. Dis. 2018, 77 (8), 1219–1225.

82.

Kayama H, Kohyama M, Okuzaki D, Motooka D, Barman S, Okumura R, Muneta M, Hoshino K, Sasaki I, Ise W, Matsuno H, Nishimura J, Kurosaki T, Nakamura S, Arase H, Kaisho T, Takeda K. Heme Ameliorates Dextran Sodium Sulfate-Induced Colitis through Providing Intestinal Macrophages with Noninflammatory Profiles. Proc. Natl. Acad. Sci. U.S.A. 2018, 115 (33), 8418–8423.

83.

Nakata J, Nakae Y, Kawakami M, Morimoto S, Motooka D, Hosen N, Fujiki F, Nakajima H, Hasegawa K, Nishida S, Tsuboi A, Oji Y, Oka Y, Kumanogoh A, Sugiyama H. Wilms Tumour 1 Peptide Vaccine as a Cure-Oriented Post-Chemotherapy Strategy for Patients with Acute Myeloid Leukaemia at High Risk of Relapse. Br. J. Haematol. 2018, 182 (2), 287–290.

84.

Yamaguchi T, Kawahara R, Harada K, Teruya S, Nakayama T, Motooka D, Nakamura S, Nguyen P D, Kumeda Y, Van Dang C, Hirata K, Yamamoto Y. The Presence of Colistin Resistance Gene Mcr-1 and -3 in ESBL Producing Escherichia Coli Isolated from Food in Ho Chi Minh City, Vietnam. FEMS Microbiol. Lett. 2018, 365 (11).

85.

Kang S, Nakanishi Y, Kioi Y, Okuzaki D, Kimura T, Takamatsu H, Koyama S, Nojima S, Nishide M, Hayama Y, Kinehara Y, Kato Y, Nakatani T, Shimogori T, Takagi J, Toyofuku T, Kumanogoh A. Semaphorin 6D Reverse Signaling Controls Macrophage Lipid Metabolism and Anti-Inflammatory Polarization. Nat. Immunol. 2018, 19 (6), 561–570.

86.

Doi Y, Yokota T, Satoh Y, Okuzaki D, Tokunaga M, Ishibashi T, Sudo T, Ueda T, Shingai Y, Ichii M, Tanimura A, Ezoe S, Shibayama H, Kohwi-Shigematsu T, Takeda J, Oritani K, Kanakura Y. Variable SATB1 Levels Regulate Hematopoietic Stem Cell Heterogeneity with Distinct Lineage Fate. Cell Rep 2018, 23 (11), 3223–3235.

87.

Katsimichas T, Ohtani T, Motooka D, Tsukamoto Y, Kioka H, Nakamoto K, Konishi S, Chimura M, Sengoku K, Miyawaki H, Sakaguchi T, Okumura R, Theofilis K, Iida T, Takeda K, Nakamura S, Sakata Y. Non-Ischemic Heart Failure With Reduced Ejection Fraction Is Associated With Altered Intestinal Microbiota. Circ. J. 2018, 82 (6), 1640–1650.

88.

Inoue A, Mizushima T, Wu X, Okuzaki D, Kambara N, Ishikawa S, Wang J, Qian Y, Hirose H, Yokoyama Y, Ikeshima R, Hiraki M, Miyoshi N, Takahashi H, Haraguchi N, Hata T, Matsuda C, Doki Y, Mori M, Yamamoto H. A MiR-29b Byproduct Sequence Exhibits Potent Tumor-Suppressive Activities via Inhibition of NF-ΚB Signaling in KRAS-Mutant Colon Cancer Cells. Mol. Cancer Ther. 2018, 17 (5), 977–987.

89.

Park H, Ohshima K, Nojima S, Tahara S, Kurashige M, Hori Y, Okuzaki D, Wada N, Ikeda J-I, Morii E. Adenylosuccinate Lyase Enhances Aggressiveness of Endometrial Cancer by Increasing Killer Cell Lectin-like Receptor C3 Expression by Fumarate. Lab. Invest. 2018, 98 (4), 449–461.

90.

Yamanishi K, Mukai K, Hashimoto T, Ikubo K, Nakasho K, El-Darawish Y, Li W, Okuzaki D, Watanabe Y, Hayakawa T, Nojima H, Yamanishi H, Okamura H, Matsunaga H. Physiological and Molecular Effects of Interleukin-18 Administration on the Mouse Kidney. J Transl Med 2018, 16 (1), 51.

91.

Yabuta N, Ota C, Sasakura T, Naito Y, Okuzaki D, Fukushima K, Nojima H. Late Cornified Envelope 1C (LCE1C), a Transcriptional Target of TAp63 Phosphorylated at T46/T281, Interacts with PRMT5. Sci Rep 2018, 8 (1), 4892.

92.

Aoki K, Harada S, Yahara K, Ishii Y, Motooka D, Nakamura S, Akeda Y, Iida T, Tomono K, Iwata S, Moriya K, Tateda K. Molecular Characterization of IMP-1-Producing Enterobacter Cloacae Complex Isolates in Tokyo. Antimicrob. Agents Chemother. 2018, 62 (3).

93.

Liu Y-S, Guo X-Y, Hirata T, Rong Y, Motooka D, Kitajima T, Murakami Y, Gao X-D, Nakamura S, Kinoshita T, Fujita M. N-Glycan-Dependent Protein Folding and Endoplasmic Reticulum Retention Regulate GPI-Anchor Processing. J. Cell Biol. 2018, 217 (2), 585–599.

94.

Theethakaew C, Nakamura S, Motooka D, Matsuda S, Kodama T, Chonsin K, Suthienkul O, Iida T. Corrigendum to “Plasmid Dynamics in Vibrio Parahaemolyticus Strains Related to Shrimp Acute Hepatopancreatic Necrosis Syndrome (AHPNS)” [Infect. Genet. Evol. (2017) 51: 211-218]. Infect. Genet. Evol. 2018, 57, 185.

95.

Masunaga N, Kagara N, Motooka D, Nakamura S, Miyake T, Tanei T, Naoi Y, Shimoda M, Shimazu K, Kim S J, Noguchi S. Highly Sensitive Detection of ESR1 Mutations in Cell-Free DNA from Patients with Metastatic Breast Cancer Using Molecular Barcode Sequencing. Breast Cancer Res. Treat. 2018, 167 (1), 49–58.

96.

Hirata T, Mishra S K, Nakamura S, Saito K, Motooka D, Takada Y, Kanzawa N, Murakami Y, Maeda Y, Fujita M, Yamaguchi Y, Kinoshita T. Identification of a Golgi GPI-N-Acetylgalactosamine Transferase with Tandem Transmembrane Regions in the Catalytic Domain. Nat Commun 2018, 9 (1), 405.

97.

Oki H, Kawahara K, Maruno T, Imai T, Muroga Y, Fukakusa S, Iwashita T, Kobayashi Y, Matsuda S, Kodama T. Interplay of a Secreted Protein with Type IVb Pilus for Efficient Enterotoxigenic Escherichia Coli Colonization. Proceedings of the National Academy of Sciences 2018, 115 (28), 7422–7427.

98.

Yoshizawa H, Motooka D, Katada R, Matsumoto Y, Nakamura S, Morii E, Iida T, Matsumoto H. Whole-Genome Sequence of Streptococcus Tigurinus Strain Osk_001, Isolated from Postmortem Material. Genome Announc 2017, 5 (35).

99.

Kawai S, Iijima H, Shinzaki S, Hiyama S, Yamaguchi T, Araki M, Iwatani S, Shiraishi E, Mukai A, Inoue T, Hayashi Y, Tsujii M, Motooka D, Nakamura S, Iida T, Takehara T. Indigo Naturalis Ameliorates Murine Dextran Sodium Sulfate-Induced Colitis via Aryl Hydrocarbon Receptor Activation. J. Gastroenterol. 2017, 52 (8), 904–919.

100.

Honma H, Kawai S, Motooka D, Nakamura S, Tougan T, Horii T, Arisue N. Draft Genome Sequence of Plasmodium Gonderi, a Malaria Parasite of African Old World Monkeys. Genome Announc 2017, 5 (28).

101.

Ono C, Fukuhara T, Motooka D, Nakamura S, Okuzaki D, Yamamoto S, Tamura T, Mori H, Sato A, Uemura K, Fauzyah Y, Kurihara T, Suda T, Nishio A, Hmwe S S, Okamoto T, Tatsumi T, Takehara T, Chayama K, Wakita T, Koike K, Matsuura Y. Characterization of MiR-122-Independent Propagation of HCV. PLoS Pathog. 2017, 13 (5), e1006374.

102.

Takino T, Kato-Mori Y, Motooka D, Nakamura S, Iida T, Hagiwara K. Postnatal Changes in the Relative Abundance of Intestinal Lactobacillus Spp. in Newborn Calves. J. Vet. Med. Sci. 2017, 79 (3), 452–455.

103.

Shibai A, Takahashi Y, Ishizawa Y, Motooka D, Nakamura S, Ying B-W, Tsuru S. Mutation Accumulation under UV Radiation in Escherichia Coli. Sci Rep 2017, 7 (1), 14531.

104.

Sakakibara S, Arimori T, Yamashita K, Jinzai H, Motooka D, Nakamura S, Li S, Takeda K, Katayama J, El Hussien M A, Narazaki M, Tanaka T, Standley D M, Takagi J, Kikutani H. Clonal Evolution and Antigen Recognition of Anti-Nuclear Antibodies in Acute Systemic Lupus Erythematosus. Sci Rep 2017, 7 (1), 16428.

105.

Rahlwes K C, Ha S A, Motooka D, Mayfield J A, Baumoel L R, Strickland J N, Torres-Ocampo A P, Nakamura S, Morita Y S. The Cell Envelope-Associated Phospholipid-Binding Protein LmeA Is Required for Mannan Polymerization in Mycobacteria. J. Biol. Chem. 2017, 292 (42), 17407–17417.

106.

Kitagawa Y, Ohkura N, Kidani Y, Vandenbon A, Hirota K, Kawakami R, Yasuda K, Motooka D, Nakamura S, Kondo M, Taniuchi I, Kohwi-Shigematsu T, Sakaguchi S. Addendum: Guidance of Regulatory T Cell Development by Satb1-Dependent Super-Enhancer Establishment. Nat. Immunol. 2017, 18 (11), 1270.

107.

Okuzaki D, Ota K, Takatsuki S-I, Akiyoshi Y, Naoi K, Yabuta N, Saji T, Nojima H. FCN1 (M-Ficolin), Which Directly Associates with Immunoglobulin G1, Is a Molecular Target of Intravenous Immunoglobulin Therapy for Kawasaki Disease. Sci Rep 2017, 7 (1), 11334.

108.

Hosokawa T, Kimura T, Nada S, Okuno T, Ito D, Kang S, Nojima S, Yamashita K, Nakatani T, Hayama Y, Kato Y, Kinehara Y, Nishide M, Mikami N, Koyama S, Takamatsu H, Okuzaki D, Ohkura N, Sakaguchi S, Okada M, Kumanogoh A. Lamtor1 Is Critically Required for CD4+ T Cell Proliferation and Regulatory T Cell Suppressive Function. J. Immunol. 2017, 199 (6), 2008–2019.

109.

Nabeya D, Kinjo T, Parrott G L, Uehara A, Motooka D, Nakamura S, Nahar S, Nakachi S, Nakamatsu M, Maeshiro S, Haranaga S, Tateyama M, Tomoyose T, Masuzaki H, Horii T, Fujita J. The Clinical and Phylogenetic Investigation for a Nosocomial Outbreak of Respiratory Syncytial Virus Infection in an Adult Hemato-Oncology Unit. J. Med. Virol. 2017, 89 (8), 1364–1372.

110.

Theethakaew C, Nakamura S, Motooka D, Matsuda S, Kodama T, Chonsin K, Suthienkul O, Iida T. Plasmid Dynamics in Vibrio Parahaemolyticus Strains Related to Shrimp Acute Hepatopancreatic Necrosis Syndrome (AHPNS). Infect. Genet. Evol. 2017, 51, 211–218.

111.

Tanigawa J, Mimatsu H, Mizuno S, Okamoto N, Fukushi D, Tominaga K, Kidokoro H, Muramatsu Y, Nishi E, Nakamura S, Motooka D, Nomura N, Hayasaka K, Niihori T, Aoki Y, Nabatame S, Hayakawa M, Natsume J, Ozono K, Kinoshita T, Wakamatsu N, Murakami Y. Phenotype-Genotype Correlations of PIGO Deficiency with Variable Phenotypes from Infantile Lethality to Mild Learning Difficulties. Hum. Mutat. 2017, 38 (7), 805–815.

112.

Tanaka A, Tumkosit U, Nakamura S, Motooka D, Kishishita N, Priengprom T, Sa-Ngasang A, Kinoshita T, Takeda N, Maeda Y. Genome-Wide Screening Uncovers the Significance of N-Sulfation of Heparan Sulfate as a Host Cell Factor for Chikungunya Virus Infection. J. Virol. 2017, 91 (13).

113.

Kurihara T, Fukuhara T, Ono C, Yamamoto S, Uemura K, Okamoto T, Sugiyama M, Motooka D, Nakamura S, Ikawa M, Mizokami M, Maehara Y, Matsuura Y. Suppression of HBV Replication by the Expression of Nickase- and Nuclease Dead-Cas9. Sci Rep 2017, 7 (1), 6122.

114.

Minamitani T, Ma Y, Zhou H, Kida H, Tsai C-Y, Obana M, Okuzaki D, Fujio Y, Kumanogoh A, Zhao B, Kikutani H, Kieff E, Gewurz B E, Yasui T. Mouse Model of Epstein-Barr Virus LMP1- and LMP2A-Driven Germinal Center B-Cell Lymphoproliferative Disease. Proc. Natl. Acad. Sci. U.S.A. 2017, 114 (18), 4751–4756.

115.

Kitada S, Kayama H, Okuzaki D, Koga R, Kobayashi M, Arima Y, Kumanogoh A, Murakami M, Ikawa M, Takeda K. BATF2 Inhibits Immunopathological Th17 Responses by Suppressing Il23a Expression during Trypanosoma Cruzi Infection. J. Exp. Med. 2017, 214 (5), 1313–1331.

116.

Ohshima K, Nojima S, Tahara S, Kurashige M, Hori Y, Hagiwara K, Okuzaki D, Oki S, Wada N, Ikeda J-I, Kanai Y, Morii E. Argininosuccinate Synthase 1-Deficiency Enhances the Cell Sensitivity to Arginine through Decreased DEPTOR Expression in Endometrial Cancer. Sci Rep 2017, 7, 45504.

117.

Lipowski D, Popiel M, Perlejewski K, Nakamura S, Bukowska-Osko I, Rzadkiewicz E, Dzieciatkowski T, Milecka A, Wenski W, Ciszek M, Debska-Slizien A, Ignacak E, Cortes K C, Pawelczyk A, Horban A, Radkowski M, Laskus T. A Cluster of Fatal Tick-Borne Encephalitis Virus Infection in Organ Transplant Setting. J. Infect. Dis. 2017, 215 (6), 896–901.

118.

Kitagawa Y, Ohkura N, Kidani Y, Vandenbon A, Hirota K, Kawakami R, Yasuda K, Motooka D, Nakamura S, Kondo M, Taniuchi I, Kohwi-Shigematsu T, Sakaguchi S. Erratum: Guidance of Regulatory T Cell Development by Satb1-Dependent Super-Enhancer Establishment. Nat. Immunol. 2017, 18 (4), 474.

119.

Fukuhara T, Yamamoto S, Ono C, Nakamura S, Motooka D, Mori H, Kurihara T, Sato A, Tamura T, Motomura T, Okamoto T, Imamura M, Ikegami T, Yoshizumi T, Soejima Y, Maehara Y, Chayama K, Matsuura Y. Quasispecies of Hepatitis C Virus Participate in Cell-Specific Infectivity. Sci Rep 2017, 7, 45228.

120.

Fujimoto K, Kinoshita M, Tanaka H, Okuzaki D, Shimada Y, Kayama H, Okumura R, Furuta Y, Narazaki M, Tamura A, Hatakeyama S, Ikawa M, Tsuchiya K, Watanabe M, Kumanogoh A, Tsukita S, Takeda K. Regulation of Intestinal Homeostasis by the Ulcerative Colitis-Associated Gene RNF186. Mucosal Immunol 2017, 10 (2), 446–459.

121.

Kitagawa Y, Ohkura N, Kidani Y, Vandenbon A, Hirota K, Kawakami R, Yasuda K, Motooka D, Nakamura S, Kondo M, Taniuchi I, Kohwi-Shigematsu T, Sakaguchi S. Guidance of Regulatory T Cell Development by Satb1-Dependent Super-Enhancer Establishment. Nat. Immunol. 2017, 18 (2), 173–183.

122.

Nishio A, Tatsumi T, Nawa T, Suda T, Yoshioka T, Onishi Y, Aono S, Shigekawa M, Hikita H, Sakamori R, Okuzaki D, Fukuhara T, Matsuura Y, Hiramatsu N, Takehara T. CD14+ Monocyte-Derived Galectin-9 Induces Natural Killer Cell Cytotoxicity in Chronic Hepatitis C. Hepatology 2017, 65 (1), 18–31.

123.

Sugawara Y, Akeda Y, Sakamoto N, Takeuchi D, Motooka D, Nakamura S, Hagiya H, Yamamoto N, Nishi I, Yoshida H, Okada K, Zin K N, Aye M M, Tomono K, Hamada S. Genetic Characterization of BlaNDM-Harboring Plasmids in Carbapenem-Resistant Escherichia Coli from Myanmar. PLoS ONE 2017, 12 (9), e0184720.

124.

Motooka D, Fujimoto K, Tanaka R, Yaguchi T, Gotoh K, Maeda Y, Furuta Y, Kurakawa T, Goto N, Yasunaga T, Narazaki M, Kumanogoh A, Horii T, Iida T, Takeda K, Nakamura S. Fungal ITS1 Deep-Sequencing Strategies to Reconstruct the Composition of a 26-Species Community and Evaluation of the Gut Mycobiota of Healthy Japanese Individuals. Front Microbiol 2017, 8, 238.

125.

Hagiyama M, Yabuta N, Okuzaki D, Inoue T, Takashima Y, Kimura R, Ri A, Ito A. Modest Static Pressure Suppresses Columnar Epithelial Cell Growth in Association with Cell Shape and Cytoskeletal Modifications. Front Physiol 2017, 8, 997.

126.

Bukowska-Ośko I, Perlejewski K, Nakamura S, Motooka D, Stokowy T, Kosińska J, Popiel M, Płoski R, Horban A, Lipowski D, Caraballo Cortés K, Pawełczyk A, Demkow U, Stępień A, Radkowski M, Laskus T. Sensitivity of Next-Generation Sequencing Metagenomic Analysis for Detection of RNA and DNA Viruses in Cerebrospinal Fluid: The Confounding Effect of Background Contamination; Advances in Experimental Medicine and Biology; 2017; Vol. 944, p 62.

127.

Hagiya H, Yoshida H, Shimizu M, Motooka D, Nakamura S, Iida T, Yamamoto N, Akeda Y, Tomono K. Herpes Zoster Laryngitis in a Patient Treated with Fingolimod. J. Infect. Chemother. 2016, 22 (12), 830–832.

128.

Harada T, Dang V C, Nguyen D P, Nguyen T A D, Sakamoto M, Ohkuma M, Motooka D, Nakamura S, Uchida K, Jinnai M, Yonogi S, Kawahara R, Kanki M, Kawai T, Kumeda Y, Yamamoto Y. Enterococcus Saigonensis Sp. Nov., Isolated from Retail Chicken Meat and Liver. Int. J. Syst. Evol. Microbiol. 2016, 66 (10), 3779–3785.

129.

Bukowska-Ośko I, Perlejewski K, Nakamura S, Motooka D, Stokowy T, Kosińska J, Popiel M, Płoski R, Horban A, Lipowski D, Caraballo Cortés K, Pawełczyk A, Demkow U, Stępień A, Radkowski M, Laskus T. Sensitivity of Next-Generation Sequencing Metagenomic Analysis for Detection of RNA and DNA Viruses in Cerebrospinal Fluid: The Confounding Effect of Background Contamination. Adv. Exp. Med. Biol. 2016.

130.

Okumura R, Kurakawa T, Nakano T, Kayama H, Kinoshita M, Motooka D, Gotoh K, Kimura T, Kamiyama N, Kusu T, Ueda Y, Wu H, Iijima H, Barman S, Osawa H, Matsuno H, Nishimura J, Ohba Y, Nakamura S, Iida T, Yamamoto M, Umemoto E, Sano K, Takeda K. Lypd8 Promotes the Segregation of Flagellated Microbiota and Colonic Epithelia. Nature 2016, 532 (7597), 117–121.

131.

Fujiwara M, Kubota T, Wang W, Ohata Y, Miura K, Kitaoka T, Okuzaki D, Namba N, Michigami T, Kitabatake Y, Ozono K. Successful Induction of Sclerostin in Human-Derived Fibroblasts by 4 Transcription Factors and Its Regulation by Parathyroid Hormone, Hypoxia, and Prostaglandin E2. Bone 2016, 85, 91–98.

132.

Kawahara K, Oki H, Fukakusa S, Yoshida T, Imai T, Maruno T, Kobayashi Y, Motooka D, Iida T, Ohkubo T, Nakamura S. Homo-Trimeric Structure of the Type IVb Minor Pilin CofB Suggests Mechanism of CFA/III Pilus Assembly in Human Enterotoxigenic Escherichia Coli. J. Mol. Biol. 2016, 428 (6), 1209–1226.

133.

Okuzaki D, Yoshizaki K, Tanaka T, Hirano T, Fukushima K, Washio T, Nojima H. Microarray and Whole-Exome Sequencing Analysis of Familial Behçet’s Disease Patients. Sci Rep 2016, 6, 19456.

134.

Nakagawa T, Taniguchi-Ikeda M, Murakami Y, Nakamura S, Motooka D, Emoto T, Satake W, Nishiyama M, Toyoshima D, Morisada N, Takada S, Tairaku S, Okamoto N, Morioka I, Kurahashi H, Toda T, Kinoshita T, Iijima K. A Novel PIGN Mutation and Prenatal Diagnosis of Inherited Glycosylphosphatidylinositol Deficiency. Am. J. Med. Genet. A 2016, 170A (1), 183–188.

135.

Matsuyama R, Okuzaki D, Okada M, Oneyama C. MicroRNA-27b Suppresses Tumor Progression by Regulating ARFGEF1 and Focal Adhesion Signaling. Cancer Sci. 2016, 107 (1), 28–35.

136.

Kouwaki T, Okamoto T, Ito A, Sugiyama Y, Yamashita K, Suzuki T, Kusakabe S, Hirano J, Fukuhara T, Yamashita A, Saito K, Okuzaki D, Watashi K, Sugiyama M, Yoshio S, Standley D M, Kanto T, Mizokami M, Moriishi K, Matsuura Y. Hepatocyte Factor JMJD5 Regulates Hepatitis B Virus Replication through Interaction with HBx. J. Virol. 2016, 90 (7), 3530–3542.

137.

Ohno S, Ikeda J-I, Naito Y, Okuzaki D, Sasakura T, Fukushima K, Nishikawa Y, Ota K, Kato Y, Wang M, Torigata K, Kasama T, Uchihashi T, Miura D, Yabuta N, Morii E, Nojima H. Comprehensive Phenotypic Analysis of Knockout Mice Deficient in Cyclin G1 and Cyclin G2. Sci Rep 2016, 6, 39091.

138.

Mokutani Y, Uemura M, Munakata K, Okuzaki D, Haraguchi N, Takahashi H, Nishimura J, Hata T, Murata K, Takemasa I, Mizushima T, Doki Y, Mori M, Yamamoto H. Down-Regulation of MicroRNA-132 Is Associated with Poor Prognosis of Colorectal Cancer. Ann. Surg. Oncol. 2016, 23 (Suppl 5), 599–608.

139.

Maeda Y, Kurakawa T, Umemoto E, Motooka D, Ito Y, Gotoh K, Hirota K, Matsushita M, Furuta Y, Narazaki M, Sakaguchi N, Kayama H, Nakamura S, Iida T, Saeki Y, Kumanogoh A, Sakaguchi S, Takeda K. Dysbiosis Contributes to Arthritis Development via Activation of Autoreactive T Cells in the Intestine. Arthritis & Rheumatology (Hoboken, N.J.) 2016, 68 (11), 2646–2661.

140.

Kawahara K, Yonogi S, Munetomo R, Oki H, Yoshida T, Kumeda Y, Matsuda S, Kodama T, Ohkubo T, Iida T, Nakamura S. Crystal Structure of the ADP-Ribosylating Component of BEC, the Binary Enterotoxin of Clostridium Perfringens. Biochem. Biophys. Res. Commun. 2016, 480 (2), 261–267.

141.

Barman S, Kayama H, Okuzaki D, Ogino T, Osawa H, Matsuno H, Mizushima T, Mori M, Nishimura J, Takeda K. Identification of a Human Intestinal Myeloid Cell Subset That Regulates Gut Homeostasis. Int. Immunol. 2016, 28 (11), 533–545.

142.

Kimura T, Nada S, Takegahara N, Okuno T, Nojima S, Kang S, Ito D, Morimoto K, Hosokawa T, Hayama Y, Mitsui Y, Sakurai N, Sarashina-Kida H, Nishide M, Maeda Y, Takamatsu H, Okuzaki D, Yamada M, Okada M, Kumanogoh A. Polarization of M2 Macrophages Requires Lamtor1 That Integrates Cytokine and Amino-Acid Signals. Nat Commun 2016, 7, 13130.

143.

Yamanishi K, Maeda S, Kuwahara-Otani S, Watanabe Y, Yoshida M, Ikubo K, Okuzaki D, El-Darawish Y, Li W, Nakasho K, Nojima H, Yamanishi H, Hayakawa T, Okamura H, Matsunaga H. Interleukin-18-Deficient Mice Develop Dyslipidemia Resulting in Nonalcoholic Fatty Liver Disease and Steatohepatitis. Transl Res 2016, 173, 101-114.e7.

144.

Ojima M, Motooka D, Shimizu K, Gotoh K, Shintani A, Yoshiya K, Nakamura S, Ogura H, Iida T, Shimazu T. Metagenomic Analysis Reveals Dynamic Changes of Whole Gut Microbiota in the Acute Phase of Intensive Care Unit Patients. Dig. Dis. Sci. 2016, 61 (6), 1628–1634.

145.

Hsieh Y-D, Nakamura S, Abdelsalam D G, Minamikawa T, Mizutani Y, Yamamoto H, Iwata T, Hindle F, Yasui T. Dynamic Terahertz Spectroscopy of Gas Molecules Mixed with Unwanted Aerosol under Atmospheric Pressure Using Fibre-Based Asynchronous-Optical-Sampling Terahertz Time-Domain Spectroscopy. Sci Rep 2016, 6, 28114.

146.

Yasugi M, Okuzaki D, Kuwana R, Takamatsu H, Fujita M, Sarker M R, Miyake M. Transcriptional Profile during Deoxycholate-Induced Sporulation in a Clostridium Perfringens Isolate Causing Foodborne Illness. Appl. Environ. Microbiol. 2016, 82 (10), 2929–2942.

147.

Wada N, Ikeda J-I, Nojima S, Tahara S-I, Ohshima K, Okuzaki D, Morii E. Requirement of CXCL12-CXCR7 Signaling for CD20(-) CD138(-) Double-Negative Population in Lymphoplasmacytic Lymphoma. Lab. Invest. 2016, 96 (5), 517–525.

148.

Nakamura S, Horie M, Daidoji T, Honda T, Yasugi M, Kuno A, Komori T, Okuzaki D, Narimatsu H, Nakaya T, Tomonaga K. Influenza A Virus-Induced Expression of a GalNAc Transferase, GALNT3, via MicroRNAs Is Required for Enhanced Viral Replication. J. Virol. 2016, 90 (4), 1788–1801.

149.

Wake N, Asahi Y, Noiri Y, Hayashi M, Motooka D, Nakamura S, Gotoh K, Miura J, Machi H, Iida T, Ebisu S. Temporal Dynamics of Bacterial Microbiota in the Human Oral Cavity Determined Using an in Situ Model of Dental Biofilms. NPJ Biofilms Microbiomes 2016, 2, 16018.

150.

Torigata K, Daisuke O, Mukai S, Hatanaka A, Ohka F, Motooka D, Nakamura S, Ohkawa Y, Yabuta N, Kondo Y, Nojima H. LATS2 Positively Regulates Polycomb Repressive Complex 2. PLoS ONE 2016, 11 (7), e0158562.

151.

Taniguchi T, Miyauchi E, Nakamura S, Hirai M, Suzue K, Imai T, Nomura T, Handa T, Okada H, Shimokawa C, Onishi R, Olia A, Hirata J, Tomita H, Ohno H, Horii T, Hisaeda H. Erratum : Plasmodium Berghei ANKA Causes Intestinal Malaria Associated with Dysbiosis (Scientific Reports (2015) 5 (15699)) DOI: 10.1038/Srep15699). Scientific Reports 2016, 6.

152.

Sunagawa S, Iha Y, Taira K, Okano S, Kinjo T, Higa F, Kuba K, Tateyama M, Nakamura K, Nakamura S, Motooka D, Horii T, Parrott G L, Fujita J. An Epidemiological Analysis of Summer Influenza Epidemics in Okinawa. Intern. Med. 2016, 55 (24), 3579–3584.

153.

Sudo T, Yokota T, Okuzaki D, Ueda T, Ichii M, Ishibashi T, Isono T, Habuchi Y, Oritani K, Kanakura Y. Endothelial Cell-Selective Adhesion Molecule Expression in Hematopoietic Stem/Progenitor Cells Is Essential for Erythropoiesis Recovery after Bone Marrow Injury. PLoS ONE 2016, 11 (4), e0154189.

154.

Perlejewski K, Bukowska-Ośko I, Nakamura S, Motooka D, Stokowy T, Płoski R, Rydzanicz M, Zakrzewska-Pniewska B, Podlecka-Piętowska A, Nojszewska M, Gogol A, Caraballo Cortés K, Demkow U, Stępień A, Laskus T, Radkowski M. Metagenomic Analysis of Cerebrospinal Fluid from Patients with Multiple Sclerosis. Adv. Exp. Med. Biol. 2016, 935, 89–98.

155.

Nagasawa Y, Okuzaki D, Muso E, Yamamoto R, Shinzawa M, Iwasaki Y, Iwatani H, Nakanishi T, Isaka Y, Nojima H. IFI27 Is a Useful Genetic Marker for Diagnosis of Immunoglobulin A Nephropathy and Membranous Nephropathy Using Peripheral Blood. PLoS ONE 2016, 11 (4), e0153252.

156.

Tsuru S, Ishizawa Y, Shibai A, Takahashi Y, Motooka D, Nakamura S, Yomo T. Genomic Confirmation of Nutrient-Dependent Mutability of Mutators in Escherichia Coli. Genes Cells 2015, 20 (12), 972–981.

157.

Perlejewski K, Popiel M, Laskus T, Nakamura S, Motooka D, Stokowy T, Lipowski D, Pollak A, Lechowicz U, Caraballo Cortés K, Stępień A, Radkowski M, Bukowska-Ośko I. Next-Generation Sequencing (NGS) in the Identification of Encephalitis-Causing Viruses: Unexpected Detection of Human Herpesvirus 1 While Searching for RNA Pathogens. J. Virol. Methods 2015, 226, 1–6.

158.

Ichihashi N, Aita T, Motooka D, Nakamura S, Yomo T. Periodic Pattern of Genetic and Fitness Diversity during Evolution of an Artificial Cell-Like System. Mol. Biol. Evol. 2015, 32 (12), 3205–3214.

159.

Yama K, Matsumoto Y, Murakami Y, Seno S, Matsuda H, Gotoh K, Motooka D, Nakamura S, Ying B-W, Yomo T. Functional Specialization in Regulation and Quality Control in Thermal Adaptive Evolution. Genes Cells 2015, 20 (11), 943–955.

160.

Watanabe Y, Yoshida M, Yamanishi K, Yamamoto H, Okuzaki D, Nojima H, Yasunaga T, Okamura H, Matsunaga H, Yamanishi H. Genetic Analysis of Genes Causing Hypertension and Stroke in Spontaneously Hypertensive Rats: Gene Expression Profiles in the Kidneys. Int. J. Mol. Med. 2015, 36 (3), 712–724.

161.

Nonaka R, Miyake Y, Hata T, Kagawa Y, Kato T, Osawa H, Nishimura J, Ikenaga M, Murata K, Uemura M, Okuzaki D, Takemasa I, Mizushima T, Yamamoto H, Doki Y, Mori M. Circulating MiR-103 and MiR-720 as Novel Serum Biomarkers for Patients with Colorectal Cancer. Int. J. Oncol. 2015, 47 (3), 1097–1102.

162.

Minamitani T, Yasui T, Ma Y, Zhou H, Okuzaki D, Tsai C-Y, Sakakibara S, Gewurz B E, Kieff E, Kikutani H. Evasion of Affinity-Based Selection in Germinal Centers by Epstein-Barr Virus LMP2A. Proc. Natl. Acad. Sci. U.S.A. 2015, 112 (37), 11612–11617.

163.

Hirata T, Fujita M, Nakamura S, Gotoh K, Motooka D, Murakami Y, Maeda Y, Kinoshita T. Post-Golgi Anterograde Transport Requires GARP-Dependent Endosome-to-TGN Retrograde Transport. Mol. Biol. Cell 2015, 26 (17), 3071–3084.

164.

Inoue H, Matsuzaki Y, Tanaka A, Hosoi K, Ichimura K, Arasaki K, Wakana Y, Asano K, Tanaka M, Okuzaki D, Yamamoto A, Tani K, Tagaya M. γ-SNAP Stimulates Disassembly of Endosomal SNARE Complexes and Regulates Endocytic Trafficking Pathways. J. Cell. Sci. 2015, 128 (15), 2781–2794.

165.

Ouji Y, Ishizaka S, Nakamura-Uchiyama F, Okuzaki D, Yoshikawa M. Partial Maintenance and Long-Term Expansion of Murine Skin Epithelial Stem Cells by Wnt-3a in Vitro. J. Invest. Dermatol. 2015, 135 (6), 1598–1608.

166.

Nishimura M, Fujii T, Hiyoshi H, Makino F, Inoue H, Motooka D, Kodama T, Ohkubo T, Kobayashi Y, Nakamura S, Namba K, Iida T. A Repeat Unit of Vibrio Diarrheal T3S Effector Subverts Cytoskeletal Actin Homeostasis via Binding to Interstrand Region of Actin Filaments. Sci Rep 2015, 5, 10870.

167.

Yokota T, Oritani K, Sudo T, Ishibashi T, Doi Y, Habuchi Y, Ichii M, Fukushima K, Okuzaki D, Tomizuka K, Yamawaki K, Kakitani M, Shimono A, Morii E, Kincade P W, Kanakura Y. Estrogen-Inducible SFRP5 Inhibits Early B-Lymphopoiesis in Vivo, but Not during Pregnancy. Eur. J. Immunol. 2015, 45 (5), 1390–1401.

168.

Okamoto M, Miyazawa T, Morikawa S, Ono F, Nakamura S, Sato E, Yoshida T, Yoshikawa R, Sakai K, Mizutani T, Nagata N, Takano J, Okabayashi S, Hamano M, Fujimoto K, Nakaya T, Iida T, Horii T, Miyabe-Nishiwaki T, Watanabe A, Kaneko A, Saito A, Matsui A, Hayakawa T, Suzuki J, Akari H, Matsuzawa T, Hirai H. Emergence of Infectious Malignant Thrombocytopenia in Japanese Macaques (Macaca Fuscata) by SRV-4 after Transmission to a Novel Host. Sci Rep 2015, 5, 8850.

169.

Naito A, Yamamoto H, Kagawa Y, Naito Y, Okuzaki D, Otani K, Iwamoto Y, Maeda S, Kikuta J, Nishikawa K, Uemura M, Nishimura J, Hata T, Takemasa I, Mizushima T, Ishii H, Doki Y, Mori M, Ishii M. RFPL4A Increases the G1 Population and Decreases Sensitivity to Chemotherapy in Human Colorectal Cancer Cells. J. Biol. Chem. 2015, 290 (10), 6326–6337.

170.

Uchiyama S, Kawahara K, Hosokawa Y, Fukakusa S, Oki H, Nakamura S, Kojima Y, Noda M, Takino R, Miyahara Y. Structural Basis for Dimer Formation of Human Condensin Structural Maintenance of Chromosome Proteins and Its Implications for Single-Stranded DNA Recognition. Journal of Biological Chemistry 2015, 290 (49), 29461–29477.

171.

Taniguchi T, Miyauchi E, Nakamura S, Hirai M, Suzue K, Imai T, Nomura T, Handa T, Okada H, Shimokawa C, Onishi R, Olia A, Hirata J, Tomita H, Ohno H, Horii T, Hisaeda H. Plasmodium Berghei ANKA Causes Intestinal Malaria Associated with Dysbiosis. Scientific Reports 2015, 5.

172.

Rong Y, Nakamura S, Hirata T, Motooka D, Liu Y-S, He Z-A, Gao X-D, Maeda Y, Kinoshita T, Fujita M. Genome-Wide Screening of Genes Required for Glycosylphosphatidylinositol Biosynthesis. PLoS ONE 2015, 10 (9), e0138553.

173.

Nishikawa Y, Okuzaki D, Fukushima K, Mukai S, Ohno S, Ozaki Y, Yabuta N, Nojima H. Withaferin A Induces Cell Death Selectively in Androgen-Independent Prostate Cancer Cells but Not in Normal Fibroblast Cells. PLoS ONE 2015, 10 (7), e0134137.

174.

Motooka D, Nakamura S, Hagiwara K, Nakaya T. Viral Detection by High-Throughput Sequencing. Methods Mol. Biol. 2015, 1236, 125–134.

175.

Motooka D, Nakamura S, Hagiwara K, Nakaya T. Viral Detection by High-Throughput Sequencing; Methods in Molecular Biology; 2015; Vol. 1236, p 134.

176.

Meirelles P M, Amado-Filho G M, Pereira-Filho G H, Pinheiro H T, de Moura R L, Joyeux J-C, Mazzei E F, Bastos A C, Edwards R A, Dinsdale E, Paranhos R, Santos E O, Iida T, Gotoh K, Nakamura S, Sawabe T, Rezende C E, Gadelha L M R, Francini-Filho R B, Thompson C, Thompson F L. Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data. PLoS ONE 2015, 10 (6), e0130084.

177.

Kawahara K, Oki H, Fukakusa S, Maruno T, Kobayashi Y, Motooka D, Taniguchi T, Honda T, Iida T, Nakamura S. Cloning, Expression, Purification, Crystallization and X-Ray Crystallographic Analysis of CofB, the Minor Pilin Subunit of CFA/III from Human Enterotoxigenic Escherichia Coli. Acta Crystallographica Section F: Structural Biology Communications 2015, 71 (6), 663–667.

178.

Fujita T, Yuno M, Okuzaki D, Ohki R, Fujii H. Identification of Non-Coding RNAs Associated with Telomeres Using a Combination of EnChIP and RNA Sequencing. PLoS ONE 2015, 10 (4), e0123387.

179.

Nonaka R, Nishimura J, Kagawa Y, Osawa H, Hasegawa J, Murata K, Okamura S, Ota H, Uemura M, Hata T, Takemasa I, Mizushima T, Okuzaki D, Yamamoto H, Doki Y, Mori M. Circulating MiR-199a-3p as a Novel Serum Biomarker for Colorectal Cancer. Oncol. Rep. 2014, 32 (6), 2354–2358.

180.

Hosomi K, Sakaguchi Y, Kohda T, Gotoh K, Motooka D, Nakamura S, Umeda K, Iida T, Kozaki S, Mukamoto M. Complete Nucleotide Sequence of a Plasmid Containing the Botulinum Neurotoxin Gene in Clostridium Botulinum Type B Strain 111 Isolated from an Infant Patient in Japan. Mol. Genet. Genomics 2014, 289 (6), 1267–1274.

181.

Fukuhara T, Wada M, Nakamura S, Ono C, Shiokawa M, Yamamoto S, Motomura T, Okamoto T, Okuzaki D, Yamamoto M, Saito I, Wakita T, Koike K, Matsuura Y. Amphipathic α-Helices in Apolipoproteins Are Crucial to the Formation of Infectious Hepatitis C Virus Particles. PLoS Pathog. 2014, 10 (12), e1004534.

182.

Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S. Performance Comparison of Second- and Third-Generation Sequencers Using a Bacterial Genome with Two Chromosomes. BMC Genomics 2014, 15, 699.

183.

Honma H, Hirai M, Nakamura S, Hakimi H, Kawazu S-I, Palacpac N M Q, Hisaeda H, Matsuoka H, Kawai S, Endo H, Yasunaga T, Ohashi J, Mita T, Horii T, Furusawa M, Tanabe K. Generation of Rodent Malaria Parasites with a High Mutation Rate by Destructing Proofreading Activity of DNA Polymerase δ. DNA Res. 2014, 21 (4), 439–446.

184.

Fujita N, Oritani K, Ichii M, Yokota T, Saitoh N, Okuzaki D, Sekine Y, Kon S, Muromoto R, Saitoh K, Yoshimura A, Matsuda T, Kanakura Y. Signal-Transducing Adaptor Protein-2 Regulates Macrophage Migration into Inflammatory Sites during Dextran Sodium Sulfate Induced Colitis. Eur. J. Immunol. 2014, 44 (6), 1791–1801.

185.

Wu H N, Nakura Y, Motooka D, Nakamura S, Nishiumi F, Ishino S, Kawai Y, Tanaka T, Takeuchi M, Nakayama M, Fujita T, Yanagihara I. Complete Genome Sequence of Ureaplasma Parvum Serovar 3 Strain SV3F4, Isolated in Japan. Genome Announc 2014, 2 (3).

186.

Hiyama S, Iijima H, Shinzaki S, Inoue T, Shiraishi E, Kawai S, Araki M, Kato M, Hayashi Y, Nishida T, Fujii H, Mukai A, Shibata N, Sato S, Kiyono H, Gotoh K, Motooka D, Nakamura S, Iida T, Tsujii M, Takehara T. Peyer’s Patches Play a Protective Role in Nonsteroidal Anti-Inflammatory Drug-Induced Enteropathy in Mice. Inflamm. Bowel Dis. 2014, 20 (5), 790–799.

187.

Arimatsu K, Yamada H, Miyazawa H, Minagawa T, Nakajima M, Ryder M I, Gotoh K, Motooka D, Nakamura S, Iida T, Yamazaki K. Oral Pathobiont Induces Systemic Inflammation and Metabolic Changes Associated with Alteration of Gut Microbiota. Sci Rep 2014, 4, 4828.

188.

Yoshida M, Watanabe Y, Yamanishi K, Yamashita A, Yamamoto H, Okuzaki D, Shimada K, Nojima H, Yasunaga T, Okamura H, Matsunaga H, Yamanishi H. Analysis of Genes Causing Hypertension and Stroke in Spontaneously Hypertensive Rats: Gene Expression Profiles in the Brain. Int. J. Mol. Med. 2014, 33 (4), 887–896.

189.

Masahata K, Umemoto E, Kayama H, Kotani M, Nakamura S, Kurakawa T, Kikuta J, Gotoh K, Motooka D, Sato S, Higuchi T, Baba Y, Kurosaki T, Kinoshita M, Shimada Y, Kimura T, Okumura R, Takeda A, Tajima M, Yoshie O, Fukuzawa M, Kiyono H, Fagarasan S, Iida T, Ishii M, Takeda K. Generation of Colonic IgA-Secreting Cells in the Caecal Patch. Nat Commun 2014, 5, 3704.

190.

Imai A, Gotoh K, Asano Y, Yamada N, Motooka D, Fukushima M, Kanzaki M, Ohtani T, Sakata Y, Nishi H, Toda K, Sawa Y, Komuro I, Horii T, Iida T, Nakamura S, Takashima S. Comprehensive Metagenomic Approach for Detecting Causative Microorganisms in Culture-Negative Infective Endocarditis. Int. J. Cardiol. 2014, 172 (2), e288-289.

191.

Yonogi S, Matsuda S, Kawai T, Yoda T, Harada T, Kumeda Y, Gotoh K, Hiyoshi H, Nakamura S, Kodama T, Iida T. BEC, a Novel Enterotoxin of Clostridium Perfringens Found in Human Clinical Isolates from Acute Gastroenteritis Outbreaks. Infection and Immunity 2014, 82 (6), 2390–2399.

192.

Seki M, Yoshida H, Gotoh K, Hamada N, Motooka D, Nakamura S, Yamamoto N, Hamaguchi S, Akeda Y, Watanabe H, Iida T, Tomono K. Severe Respiratory Failure Due to Co-Infection with Human Metapneumovirus and Streptococcus Pneumoniae. Respir Med Case Rep 2014, 12, 13–15.

193.

Seki M, Ohno H, Gotoh K, Motooka D, Nakamura S, Iida T, Miyazaki Y, Tomono K. Allergic Bronchopulmonary Mycosis Due to Co-Infection with Aspergillus Fumigatus and Schizophyllum Commune. IDCases 2014, 1 (1), 5–8.

194.

Sakurai M A, Ozaki Y, Okuzaki D, Naito Y, Sasakura T, Okamoto A, Tabara H, Inoue T, Hagiyama M, Ito A, Yabuta N, Nojima H. Gefitinib and Luteolin Cause Growth Arrest of Human Prostate Cancer PC-3 Cells via Inhibition of Cyclin G-Associated Kinase and Induction of MiR-630. PLoS ONE 2014, 9 (6), e100124.

195.

Niimi M, Masuda T, Kaihatsu K, Kato N, Nakamura S, Nakaya T, Arai F. Virus Purification and Enrichment by Hydroxyapatite Chromatography on a Chip. Sensors and Actuators, B: Chemical 2014, 201, 185–190.

196.

Ikegami T, Yoshizumi T, Kato M, Yamamoto S, Fukuhara T, Matsuura Y, Nakamura S, Itoh S, Shirabe K, Maehara Y. Reduced-Dose Telaprevir-Based Triple Antiviral Therapy for Recurrent Hepatitis C after Living Donor Liver Transplantation. Transplantation 2014, 98 (9), 994–999.

197.

Harada S, Hiromori Y, Nakamura S, Kawahara K, Fukakusa S, Maruno T, Noda M, Uchiyama S, Fukui K, Nishikawa J-I, Nagase H, Kobayashi Y, Yoshida T, Ohkubo T, Nakanishi T. Structural Basis for PPARγ Transactivation by Endocrine-Disrupting Organotin Compounds. Scientific Reports 2014, 5.

198.

Chaitaveep N, Utachee P, Nakamura S, Chuenchitra T, Ekpo P, Takeda N, Pattanapanyasat K, Kameoka M. Characterization of Human Immunodeficiency Virus Type 1 CRF01_AE Env Genes Derived from Recently Infected Thai Individuals. Microbes and Infection 2014, 16 (2), 142–152.

199.

Cavalcanti G S, Gregoracci G B, Dos Santos E O, Silveira C B, Meirelles P M, Longo L, Gotoh K, Nakamura S, Iida T, Sawabe T, Rezende C E, Francini-Filho R B, Moura R L, Amado-Filho G M, Thompson F L. Physiologic and Metagenomic Attributes of the Rhodoliths Forming the Largest CaCO3 Bed in the South Atlantic Ocean. ISME Journal 2014, 8 (1), 52–62.

200.

Ogino T, Nishimura J, Barman S, Kayama H, Uematsu S, Okuzaki D, Osawa H, Haraguchi N, Uemura M, Hata T, Takemasa I, Mizushima T, Yamamoto H, Takeda K, Doki Y, Mori M. Increased Th17-Inducing Activity of CD14+ CD163 Low Myeloid Cells in Intestinal Lamina Propria of Patients with Crohn’s Disease. Gastroenterology 2013, 145 (6), 1380-1391.e1.

201.

Muso E, Okuzaki D, Kobayashi S, Iwasaki Y, Sakurai M A, Ito A, Nojima H. Ficolin-1 Is up-Regulated in Leukocytes and Glomeruli from Microscopic Polyangiitis Patients. Autoimmunity 2013, 46 (8), 513–524.

202.

Nagi-Miura N, Okuzaki D, Torigata K, Sakurai M A, Ito A, Ohno N, Nojima H. CAWS Administration Increases the Expression of Interferon γ and Complement Factors That Lead to Severe Vasculitis in DBA/2 Mice. BMC Immunol. 2013, 14, 44.

203.

Katahira J, Okuzaki D, Inoue H, Yoneda Y, Maehara K, Ohkawa Y. Human TREX Component Thoc5 Affects Alternative Polyadenylation Site Choice by Recruiting Mammalian Cleavage Factor I. Nucleic Acids Res. 2013, 41 (14), 7060–7072.

204.

Shiromoto Y, Kuramochi-Miyagawa S, Daiba A, Chuma S, Katanaya A, Katsumata A, Nishimura K, Ohtaka M, Nakanishi M, Nakamura T, Yoshinaga K, Asada N, Nakamura S, Yasunaga T, Kojima-Kita K, Itou D, Kimura T, Nakano T. GPAT2, a Mitochondrial Outer Membrane Protein, in PiRNA Biogenesis in Germline Stem Cells. RNA 2013, 19 (6), 803–810.

205.

Yamamoto H, Okuzaki D, Yamanishi K, Xu Y, Watanabe Y, Yoshida M, Yamashita A, Goto N, Nishiguchi S, Shimada K, Nojima H, Yasunaga T, Okamura H, Matsunaga H, Yamanishi H. Genetic Analysis of Genes Causing Hypertension and Stroke in Spontaneously Hypertensive Rats. Int. J. Mol. Med. 2013, 31 (5), 1057–1065.

206.

Seki M, Gotoh K, Nakamura S, Akeda Y, Yoshii T, Miyaguchi S, Inohara H, Horii T, Oishi K, Iida T, Tomono K. Fatal Sepsis Caused by an Unusual Klebsiella Species That Was Misidentified by an Automated Identification System. J. Med. Microbiol. 2013, 62 (Pt 5), 801–803.

207.

Yabuta N, Mukai S, Okamoto A, Okuzaki D, Suzuki H, Torigata K, Yoshida K, Okada N, Miura D, Ito A, Ikawa M, Okabe M, Nojima H. N-Terminal Truncation of Lats1 Causes Abnormal Cell Growth Control and Chromosomal Instability. J. Cell. Sci. 2013, 126 (Pt 2), 508–520.

208.

Oneyama C, Kito Y, Asai R, Ikeda J, Yoshida T, Okuzaki D, Kokuda R, Kakumoto K, Takayama K, Inoue S, Morii E, Okada M. MiR-424/503-Mediated Rictor Upregulation Promotes Tumor Progression. PLoS ONE 2013, 8 (11), e80300.

209.

Morita M, Kuba K, Ichikawa A, Nakayama M, Katahira J, Iwamoto R, Watanebe T, Sakabe S, Daidoji T, Nakamura S, Kadowaki A, Ohto T, Nakanishi H, Taguchi R, Nakaya T, Murakami M, Yoneda Y, Arai H, Kawaoka Y, Penninger J M, Arita M, Imai Y. The Lipid Mediator Protectin D1 Inhibits Influenza Virus Replication and Improves Severe Influenza. Cell 2013, 153 (1), 112–125.

210.

Monira S, Nakamura S, Gotoh K, Izutsu K, Watanabe H, Alam N H, Nakaya T, Horii T, Ali Sk I, Iida T, Alam M. Metagenomic Profile of Gut Microbiota in Children during Cholera and Recovery. Gut Pathogens 2013, 5 (1).

211.

Kaihatsu K, Sawada S, Nakamura S, Nakaya T, Yasunaga T, Kato N. Sequence-Specific and Visual Identification of the Influenza Virus NS Gene by Azobenzene-Tethered Bis-Peptide Nucleic Acid. PLoS ONE 2013, 8 (5).

212.

Kagawa Y, Matsumoto S, Kamioka Y, Mimori K, Naito Y, Ishii T, Okuzaki D, Nishida N, Maeda S, Naito A, Kikuta J, Nishikawa K, Nishimura J, Haraguchi N, Takemasa I, Mizushima T, Ikeda M, Yamamoto H, Sekimoto M, Ishii H, Doki Y, Matsuda M, Kikuchi A, Mori M, Ishii M. Cell Cycle-Dependent Rho GTPase Activity Dynamically Regulates Cancer Cell Motility and Invasion in Vivo. PLoS ONE 2013, 8 (12), e83629.

213.

Ideno S, Sakai K, Yunoki M, Kubota-Koketsu R, Inoue Y, Nakamura S, Yasunaga T, Okuno Y, Ikuta K. Immunization of Rabbits with Synthetic Peptides Derived from a Highly Conserved β-Sheet Epitope Region underneath the Receptor Binding Site of Influenza A Virus. Biologics: Targets and Therapy 2013, 7 (1), 233–241.

214.

Garcia G D, Gregoracci G B, Santos E O, Meirelles P M, Silva G G Z, Edwards R, Sawabe T, Gotoh K, Nakamura S, Iida T, de Moura R L, Thompson F L. Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia Braziliensis Corals. Microbial Ecology 2013, 65 (4), 1076–1086.

215.

Park H S, Byun B J, Motooka D, Kawahara K, Doi M, Nakazawa T, Kobayashi Y, Kang Y K. Conformational Preferences of 4-Chloroproline Residues. Biopolymers 2012, 97 (8), 629–641.

216.

Fukuhara T, Kambara H, Shiokawa M, Ono C, Katoh H, Morita E, Okuzaki D, Maehara Y, Koike K, Matsuura Y. Expression of MicroRNA MiR-122 Facilitates an Efficient Replication in Nonhepatic Cells upon Infection with Hepatitis C Virus. J. Virol. 2012, 86 (15), 7918–7933.

217.

Kawahara K, Nemoto N, Motooka D, Nishi Y, Doi M, Uchiyama S, Nakazawa T, Nishiuchi Y, Yoshida T, Ohkubo T, Kobayashi Y. Polymorphism of Collagen Triple Helix Revealed by 19F NMR of Model Peptide [Pro-4(R)-Hydroxyprolyl-Gly]3-[Pro-4(R)-Fluoroprolyl-Gly]-[Pro-4(R)-Hydroxyprolyl-Gly]3. J Phys Chem B 2012, 116 (23), 6908–6915.

218.

de Silva U C, Tanaka H, Nakamura S, Goto N, Yasunaga T. A Comprehensive Analysis of Reassortment in Influenza A Virus. Biol Open 2012, 1 (4), 385–390.

219.

Oneyama C, Morii E, Okuzaki D, Takahashi Y, Ikeda J, Wakabayashi N, Akamatsu H, Tsujimoto M, Nishida T, Aozasa K, Okada M. MicroRNA-Mediated Upregulation of Integrin-Linked Kinase Promotes Src-Induced Tumor Progression. Oncogene 2012, 31 (13), 1623–1635.

220.

Yasugi M, Nakamura S, Daidoji T, Kawashita N, Ramadhany R, Yang C-S, Yasunaga T, Iida T, Horii T, Ikuta K, Takahashi K, Nakaya T. Frequency of D222G and Q223R Hemagglutinin Mutants of Pandemic (H1N1) 2009 Influenza Virus in Japan between 2009 and 2010. PLoS ONE 2012, 7 (2), e30946.

221.

Tamaki H, Zhang R, Angly F E, Nakamura S, Hong P-Y, Yasunaga T, Kamagata Y, Liu W-T. Metagenomic Analysis of DNA Viruses in a Wastewater Treatment Plant in Tropical Climate. Environmental Microbiology 2012, 14 (2), 441–452.

222.

Tachibana S-I, Sullivan S A, Kawai S, Nakamura S, Kim H R, Goto N, Arisue N, Palacpac N M Q, Honma H, Yagi M, Tougan T, Katakai Y, Kaneko O, Mita T, Kita K, Yasutomi Y, Sutton P L, Shakhbatyan R, Horii T, Yasunaga T, Barnwell J W, Escalante A A, Carlton J M, Tanabe K. Plasmodium Cynomolgi Genome Sequences Provide Insight into Plasmodium Vivax and the Monkey Malaria Clade. Nature Genetics 2012, 44 (9), 1051–1055.

223.

Ramadhany R, Yasugi M, Nakamura S, Daidoji T, Watanabe Y, Takahashi K, Ikuta K, Nakaya T. Tropism of Pandemic 2009 H1N1 Influenza A Virus. Frontiers in Microbiology 2012, 3 (APR).

224.

Motooka D, Kawahara K, Nakamura S, Doi M, Nishi Y, Nishiuchi Y, Kang Y K, Nakazawa T, Uchiyama S, Yoshida T, Ohkubo T, Kobayashi Y. The Triple Helical Structure and Stability of Collagen Model Peptide with 4(S)-Hydroxyprolyl-Pro-Gly Units. Biopolymers 2012, 98 (2), 111–121.

225.

Manríquez M E V, Makino A, Tanaka M, Abe Y, Yoshida H, Morioka I, Arakawa S, Takeshima Y, Iwata K, Takasaki J, Manabe T, Nakaya T, Nakamura S, Iglesias A L H, Rossales R M R, Mirabal E P, Ito T, Kitazawa T, Oka T, Yamashita M, Kudo K, Shinya K. Emergence of HA Mutants during Influenza Virus Pneumonia. International Journal of Clinical and Experimental Pathology 2012, 5 (8), 787–795.

226.

Fukakusa S, Kawahara K, Nakamura S, Iwashita T, Baba S, Nishimura M, Kobayashi Y, Honda T, Iida T, Taniguchi T, Ohkubo T. Structure of the CFA/III Major Pilin Subunit CofA from Human Enterotoxigenic Escherichia Coli Determined at 0.90 Å Resolution by Sulfur-SAD Phasing. Acta Crystallographica Section D: Biological Crystallography 2012, 68 (10), 1418–1429.

227.

Oneyama C, Ikeda J, Okuzaki D, Suzuki K, Kanou T, Shintani Y, Morii E, Okumura M, Aozasa K, Okada M. MicroRNA-Mediated Downregulation of MTOR/FGFR3 Controls Tumor Growth Induced by Src-Related Oncogenic Pathways. Oncogene 2011, 30 (32), 3489–3501.

228.

Okuzaki D, Kimura S, Yabuta N, Ohmine T, Nojima H. LeukoCatch, a Quick and Efficient Tool for the Preparation of Leukocyte Extracts from Blood. BMC Clin Pathol 2011, 11, 9.

229.

Noda M, Uchiyama S, McKay A R, Morimoto A, Misawa S, Yoshida A, Shimahara H, Takinowaki H, Nakamura S, Kobayashi Y, Matsunaga S, Ohkubo T, Robinson C V, Fukui K. Assembly States of the Nucleosome Assembly Protein 1 (NAP-1) Revealed by Sedimentation Velocity and Non-Denaturing MS. Biochem. J. 2011, 436 (1), 101–112.

230.

Honda T, Fujino K, Okuzaki D, Ohtaki N, Matsumoto Y, Horie M, Daito T, Itoh M, Tomonaga K. Upregulation of Insulin-like Growth Factor Binding Protein 3 in Astrocytes of Transgenic Mice That Express Borna Disease Virus Phosphoprotein. J. Virol. 2011, 85 (9), 4567–4571.

231.

Nakaya T, Nakamura S, Okamoto Y, Nagai Y, Kawai J, Hayashizaki Y, Iida T, Horii T. Direct Metagenomic Detection of Viral Pathogens in Human Specimens Using an Unbiased High-Throughput Sequencing Approach. In Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, 2011, pp 73–80.

232.

Nakamura S, Nakaya T, Iida T. Metagenomic Analysis of Bacterial Infections by Means of High-Throughput DNA Sequencing. Experimental Biology and Medicine 2011, 236 (8), 968–971.

233.

Monira S, Nakamura S, Gotoh K, Izutsu K, Watanabe H, Alam N H, Endtz H P, Cravioto A, Ali S I, Nakaya T, Horii T, Iida T, Alam M. Gut Microbiota of Healthy and Malnourished Children in Bangladesh. Frontiers in Microbiology 2011, 2 (NOV).

234.

Kerdsin A, Dejsirilert S, Puangpatra P, Sripakdee S, Chumla K, Boonkerd N, Polwichai P, Tanimura S, Takeuchi D, Nakayama T, Nakamura S, Akeda Y, Gottschalk M, Sawanpanyalert P, Oishi K. Genotypic Profile of Streptococcus Suis Serotype 2 and Clinical Features of Infection in Humans, Thailand. Emerging Infectious Diseases 2011, 17 (5), 835–842.

235.

Iwatani H, Iio K, Nagasawa Y, Yamamoto R, Horii A, Okuzaki D, Inohara H, Nojima H, Imai E, Rakugi H, Isaka Y. Microarray Analysis of Tonsils of IgA Nephropathy Patients. Adv. Otorhinolaryngol. 2011, 72, 75–78.

236.

Tougan T, Kasama T, Ohtaka A, Okuzaki D, Saito T T, Russell P, Nojima H. The Mek1 Phosphorylation Cascade Plays a Role in Meiotic Recombination of Schizosaccharomyces Pombe. Cell Cycle 2010, 9 (23), 4688–4702.

237.

Okuzaki D, Fukushima T, Tougan T, Ishii T, Kobayashi S, Yoshizaki K, Akita T, Nojima H. GenopalTM: A Novel Hollow Fibre Array for Focused Microarray Analysis. DNA Res. 2010, 17 (6), 369–379.

238.

Funato Y, Terabayashi T, Sakamoto R, Okuzaki D, Ichise H, Nojima H, Yoshida N, Miki H. Nucleoredoxin Sustains Wnt/β-Catenin Signaling by Retaining a Pool of Inactive Dishevelled Protein. Curr. Biol. 2010, 20 (21), 1945–1952.

239.

Okuzaki D, Kasama T, Hirata A, Ohtaka A, Kakegawa R, Nojima H. Spo5 Phosphorylation Is Essential for Its Own Timely Degradation and for Successful Meiosis in Schizosaccharomyces Pombe. Cell Cycle 2010, 9 (18), 3751–3760.

240.

Kawahara K, Nakamura S, Katsu Y, Motooka D, Hosokawa Y, Kojima Y, Matsukawa K, Takinowaki H, Uchiyama S, Kobayashi Y, Fukui K, Ohkubo T. Cloning, Expression, Crystallization and Preliminary X-Ray Crystallographic Analysis of a Human Condensin SMC2 Hinge Domain with Short Coiled Coils. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2010, 66 (Pt 9), 1067–1070.

241.

Taichi M, Yamazaki T, Kawahara K, Motooka D, Nakamura S, Harada S, Teshima T, Ohkubo T, Kobayashi Y, Nishiuchi Y. Structure-Activity Relationship of Marinostatin, a Serine Protease Inhibitor Isolated from a Marine Organism. J. Pept. Sci. 2010, 16 (7), 329–336.

242.

Shigehisa A, Okuzaki D, Kasama T, Tohda H, Hirata A, Nojima H. Mug28, a Meiosis-Specific Protein of Schizosaccharomyces Pombe, Regulates Spore Wall Formation. Mol. Biol. Cell 2010, 21 (12), 1955–1967.

243.

Iio K, Nagasawa Y, Iwatani H, Yamamoto R, Horii A, Okuzaki D, Furumatsu Y, Inohara H, Nojima H, Imai E, Isaka Y, Rakugi H. Microarray Analysis of Tonsils in Immunoglobulin A Nephropathy Patients. Biochem. Biophys. Res. Commun. 2010, 393 (4), 565–570.

244.

Utachee P, Nakamura S, Isarangkura-na-ayuthaya P, Tokunaga K, Sawanpanyalert P, Ikuta K, Auwanit W, Kameoka M. Two N-Linked Glycosylation Sites in the V2 and C2 Regions of Human Immunodeficiency Virus Type 1 CRF01-AE Envelope Glycoprotein Gp120 Regulate Viral Neutralization Susceptibility to the Human Monoclonal Antibody Specific for the CD4 Binding Domain. Journal of Virology 2010, 84 (9), 4311–4320.

245.

Takahashi R, Nakamura S, Nakazawa T, Minoura K, Yoshida T, Nishi Y, Kobayashi Y, Ohkubo T. Structure and Reaction Mechanism of Human Nicotinamide Phosphoribosyltransferase. Journal of Biochemistry 2010, 147 (1), 95–107.

246.

Kameoka M, Isarangkura-na-ayuthaya P, Kameoka Y, Sapsutthipas S, Soonthornsata B, Nakamura S, Tokunaga K, Sawanpanyalert P, Ikuta K, Auwanit W. The Role of Lysine Residue at Amino Acid Position 165 of Human Immunodeficiency Virus Type 1 CRF01_AE Gag in Reducing Viral Drug Susceptibility to Protease Inhibitors. Virology 2010, 405 (1), 129–138.

247.

Izumi K, Nakamura S, Nakano H, Shimura K, Sakagami Y, Oishi S, Uchiyama S, Ohkubo T, Kobayashi Y, Fujii N, Matsuoka M, Kodama E N. Characterization of HIV-1 Resistance to a Fusion Inhibitor, N36, Derived from the Gp41 Amino-Terminal Heptad Repeat. Antiviral Research 2010, 87 (2), 179–186.

248.

Obuchi M, Kawahara K, Motooka D, Nakamura S, Yamanaka M, Takeda T, Uchiyama S, Kobayashi Y, Ohkubo T, Sambongi Y. Hyperstability and Crystal Structure of Cytochrome c(555) from Hyperthermophilic Aquifex Aeolicus. Acta Crystallogr. D Biol. Crystallogr. 2009, 65 (Pt 8), 804–813.

249.

Du A, Daidoji T, Koma T, Ibrahim M S, Nakamura S, de Silva U C, Ueda M, Yang C-S, Yasunaga T, Ikuta K, Nakaya T. Detection of Circulating Asian H5N1 Viruses by a Newly Established Monoclonal Antibody. Biochem. Biophys. Res. Commun. 2009, 378 (2), 197–202.

250.

Utachee P, Jinnopat P, Isarangkura-na-ayuthaya P, de Silva U C, Nakamura S, Siripanyaphinyo U, Wichukchinda N, Tokunaga K, Yasunaga T, Sawanpanyalert P, Ikuta K, Auwanit W, Kameoka M. Phenotypic Studies on Recombinant Human Immunodeficiency Virus Type 1 (HIV-1) Containing CRF01_AE Env Gene Derived from HIV-1-Infected Patient, Residing in Central Thailand. Microbes and Infection 2009, 11 (3), 334–343.

251.

Utachee P, Jinnopat P, Isarangkura-Na-Ayuthaya P, De Silva U C, Nakamura S, Siripanyaphinyo U, Wichukchinda N, Tokunaga K, Yasunaga T, Sawanpanyalert P, Ikuta K, Auwanit W, Kameoka M. Genotypic Characterization of CRF01-AE Env Genes Derived from Human Immunodeficiency Virus Type 1-Infected Patients Residing in Central Thailand. AIDS Research and Human Retroviruses 2009, 25 (2), 229–236.

252.

Takahashi T, Ohzawa T, Sawada S, Kato N, Goto N, Nakamura S, Yasunaga T, Kaihatsu K. Inhibition of Influenza Virus Infection by Targeting Genome Conserved Region with Non-Natural Nucleic Acid. Nucleic acids symposium series (2004) 2009, No. 53, 285–286.

253.

Sonoyama T, Hasegawa J, Uchiyama S, Nakamura S, Kobayashi Y, Sambongi Y. Stability Enhancement of Cytochrome c through Heme Deprotonation and Mutations. Biophysical Chemistry 2009, 139 (1), 37–41.

254.

Nishikawa H, Nakamura S, Kodama E, Ito S, Kajiwara K, Izumi K, Sakagami Y, Oishi S, Ohkubo T, Kobayashi Y, Otaka A, Fujii N, Matsuoka M. Electrostatically Constrained α-Helical Peptide Inhibits Replication of HIV-1 Resistant to Enfuvirtide. International Journal of Biochemistry and Cell Biology 2009, 41 (4), 891–899.

255.

Nakamura S, Yang C-S, Sakon N, Ueda M, Tougan T, Yamashita A, Goto N, Takahashi K, Yasunaga T, Ikuta K, Mizutani T, Okamoto Y, Tagami M, Morita R, Maeda N, Kawai J, Hayashizaki Y, Nagai Y, Horii T, Iida T, Nakaya T. Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach. PLoS ONE 2009, 4 (1), e4219.

256.

Kerdsin A, Oishi K, Sripakdee S, Boonkerd N, Polwichai P, Nakamura S, Uchida R, Sawanpanyalert P, Dejsirilert S. Clonal Dissemination of Human Isolates of Streptococcus Suis Serotype 14 in Thailand. Journal of Medical Microbiology 2009, 58 (11), 1508–1513.

257.

Tougan T, Okuzaki D, Nojima H. Chum-RNA Allows Preparation of a High-Quality CDNA Library from a Single-Cell Quantity of MRNA without PCR Amplification. Nucleic Acids Res. 2008, 36 (15), e92.

258.

Kobayashi S, Ito A, Okuzaki D, Onda H, Yabuta N, Nagamori I, Suzuki K, Hashimoto H, Nojima H. Expression Profiling of PBMC-Based Diagnostic Gene Markers Isolated from Vasculitis Patients. DNA Res. 2008, 15 (4), 253–265.

259.

Ohtaka A, Okuzaki D, Nojima H. Mug27 Is a Meiosis-Specific Protein Kinase That Functions in Fission Yeast Meiosis II and Sporulation. J. Cell. Sci. 2008, 121 (Pt 9), 1547–1558.

260.

Tougan T, Onda H, Okuzaki D, Kobayashi S, Hashimoto H, Nojima H. Focused Microarray Analysis of Peripheral Mononuclear Blood Cells from Churg-Strauss Syndrome Patients. DNA Res. 2008, 15 (2), 103–114.

261.

Nakamura S, Maeda N, Miron I M, Yoh M, Izutsu K, Kataoka C, Honda T, Yasunaga T, Nakaya T, Kawai J, Hayashizaki Y, Horii T, Iida T. Metagenomic Diagnosis of Bacterial Infections. Emerging Infectious Diseases 2008, 14 (11), 1784–1786.

262.

Matsumoto S, Yoshida T, Murata H, Harada S, Fujita N, Nakamura S, Yamamoto Y, Watanabe T, Yonekura H, Yamamoto H, Ohkubo T, Kobayashi Y. Solution Structure of the Variable-Type Domain of the Receptor for Advanced Glycation End Products: New Insight into AGE-RAGE Interaction. Biochemistry 2008, 47 (47), 12299–12311.

263.

Li S-M, Li G-M, Nakamura S, Ikuta K, Nakaya T. Reduced Incorporation of SARS-CoV Spike Protein into Viral Particles Due to Amino Acid Substitutions within the Receptor Binding Domain. Japanese Journal of Infectious Diseases 2008, 61 (2), 123–127.

264.

Hakamada S, Sonoyama T, Ichiki S-I, Nakamura S, Uchiyama S, Kobayashi Y, Sambongi Y. Stabilization Mechanism of Cytochrome C552 from a Moderately Thermophilic Bacterium, Hydrogenophilus Thermoluteolus. Bioscience, Biotechnology and Biochemistry 2008, 72 (8), 2103–2109.